BAC Information

Click to search

BAC

Clone NameMSMg01-311E07
Chromosome11 (Build37)
Map Location 121,153,929 - 121,154,239
singlet/doubletsinglet
Overlap geneFoxk2
Upstream geneActg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf
Downstream geneWdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl, Ptchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311E07.T7 (MSMg01no311_e07.b1)MSMg01-311E07.TJ (MSMg01no311_e07.g1)
ACCAG433820AG433821
length749798
length of high quality
(start - end)
316 (36 - 351)113 (75 - 187)
definitionCHROMAT_FILE: MSMg01no311_e07.b1 PHD_FILE: MSMg01no311_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:04 2005CHROMAT_FILE: MSMg01no311_e07.g1 PHD_FILE: MSMg01no311_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTAG
CAAGAAAAGTACAATATATACCAGAAACACACAGACATAAACAATCACAT
ACCTTGAGTCTTACTCAAGATTTCAAAACTACCTCATCTCAAAGCCCCTG
GGAACTGGTATTTCAAATCATCAGCATTCTGAACATAAACAAATGAAAAC
AAGCCCTTAGACCTTAAGGGTCCTCACATGCACACACTGACTGTGCTCCA
CAGTATCCCATGGGACAGAGTGGACAAATTAGTCAATGTTCTCTGGGACC
TTTAAAAGTCATGATTGTTTTAAGCACAAACTTCATTCCATGGAGGACAG
TTAAGGTGAGCTCNAANACCAAACCTGNTGGGTATTCTANTGATGAGNAA
NACCCCCCCCCCTTAAACNAAATNAAAAATTAGGGGGTGGGCGATACAGC
TGGAATCCAATATGCATTATGCTAAGGCCCTTGACACAGAACAGACTATG
GTCATGTTTCCCAAATCCAGCGACTTCTCGGAGAATGTCCCGTATTACGC
GTAGCCCACCTAGTCTAAGCCGTAATGGTTTCCTTCTTTTCTTTCTTTTT
CCTATTGATTAAACTATTCTCACAACGTTCATTTAATACTTTTCCCTGAT
ATCATTCTTTTTCTTATCTCTCCTAACTATATCTAGGCCACCACTCATAG
TTCTTTTTTACCCTGCTACAATTTCTTCCATACTCTTCTACTCAATTTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTATGTGAAGCTAGGCTGGCCTCGA
ACTCACAGTGATCCTCCTGCCTCTGCCTCCACACTGATGTTTATTTTATT
TTTATTGTTACTCTTTTTTGGGGGGTTGGGGGGGAGANNNNNNNNNANAN
ANNNGTTNTTANTTTNTTATTTTATAGTTTACTATATGTATTAATAATTT
TATTTATAGTTATGAAAAAAACATAAAGAAATAATTAAAAAACAATCGCG
CAATANCAAAAACATTTTTTTTACAATTAAAAAGCAAAAAAACAAAAGAA
TTTTTAAGTGATTTCCCCAAAACAAACCCCCGATGATTATTTTTATAATT
AATGTTGTGNCCCCCCCCCCCAAAAAAAAAAAAAAAAAAAATTGTGGGGG
GCGGGGGGTGATACCCTTTTTCCCCATATTAAAAATATACTCCCTCCGTC
ATAACTTATTAGCTTACCTATTACCGACCTCTATACCGATTATCCCATTC
AAAACCACTACACTTATACTTTACATAACCATACAAAAACAAATTTATAA
AACTAAATATATCTACCATATAACAATATTATCACCTCTCTTTTTCATTC
ATTATACTTTTGTTATAACTATATACGGATAATTATAACATCCAATACCA
TAACAACCACCCTTACTCTACATATAAAAACTTTCACCCCACACCCCCTT
AATCAATCACTACCATCTTACCTTACACTACATCCGCATATTTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_e07.b1 MSMg01no311_e07.b1 CHROMAT_FILE:
MSMg01no311_e07.b1 PHD_FILE: MSMg01no311_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:04 2005
         (316 letters)



>mm_chr11_121153725_121154440
          Length = 716

 Score =  586 bits (303), Expect = e-172
 Identities = 309/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttagcaagaaaagtacaatatataccagaaacacacagacataaacaatcaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattctttagcaagaaaagtacaatatataccagaaacacacagacataaacaatcaca 456

                                                                       
Query: 65  taccttgagtcttactcaagatttcaaaactacctcatctcaaagcccctgggaactggt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 taccttgagtcttactcaagatttcaaaactacctcatctcaaagcccctgggaactggt 396

                                                                       
Query: 125 atttcaaatcatcagcattctgaacataaacaaatgaaaacaagcccttagaccttaagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 atttcaaatcatcagcattctgaacataaacaaatgaaaacaagcccttagaccttaagg 336

                                                                       
Query: 185 gtcctcacatgcacacactgactgtgctccacagtatcccatgggacagagtggacaaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gtcctcacatgcacacactgactgtgctccacagtatcccatgggacagagtggacaaat 276

                                                                       
Query: 245 tagtcaatgttctctgggacctttaaaagtcatgattgttttaagcacaaacttcattcc 304
           ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 275 tagtcaatgctctctgggacctttaaaagtcatgagtgttttaagcacaaacttcattcc 216

                      
Query: 305 atggaggacag 315
           |||||||||||
Sbjct: 215 atggaggacag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)