BAC Information

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BAC

Clone NameMSMg01-311M17
Chromosome11 (Build37)
Map Location 90,226,725 - 90,226,999
singlet/doubletsinglet
Overlap geneHlf
Upstream gene4932411E22Rik, Ankfn1, Pctp, Tmem100, LOC100039104, Mmd
Downstream geneStxbp4, LOC100039267, Cox11, Tom1l1, LOC638903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311M17.T7 (MSMg01no311_m17.b1)MSMg01-311M17.TJ (MSMg01no311_m17.g1)
ACCAG434192AG434193
length740738
length of high quality
(start - end)
374 (45 - 418)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no311_m17.b1 PHD_FILE: MSMg01no311_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:44 2005CHROMAT_FILE: MSMg01no311_m17.g1 PHD_FILE: MSMg01no311_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTGCAATACCTTTAATAGTGGTTACTTTTTAAAATATTTTTATTA
TGTATTTTCCTCATTTACTTTTCCCATGCTATCCCAGGAGTCCCCCATAT
CCTACCCCGCACTCCCCTACCCACCCATTTCCACTTTTTGGCCCTGGCAT
TCCTGGCATATAAAGTTTGGTGTCCAATGGGCCTCTCTTTCCAGTGACGG
CTGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGG
GGTACTGGTTAGTTCATAATGTTGTTGCACCTACAGGGTTGTAGATCTCT
TTAGCTCTTTGGATACTTTCTCTAGCTCCTCCATTGGGGGTCCTGTGATC
TATCCAATAGCTGACCCCCACCANCCACTTCTGTGTTTGCTAGGCCCCGG
CCTAGTCTCACAAGAGACAGCTATATCAGGGTCCTTTCAGCAAATGCTTG
CTAGTGTATGTAATGGTGTCATCGTTTGGAGGCTAATTATGGGATGGATC
CGTGGATATGGCAGTCTCTAGATGGTCCATCCTTTTGTCTCAGCTCCCAA
CTTTGTCTTTGTAACTCCTTCCATGGTTGACTGTTTCCAATTCTAACAAT
AGGCAAAAGGTCCCACACTTTTGCCCTCCGTTCCTCTCGAATCTTATGTG
CTTTTGCCAAGTGTACTCCTATTTCCTACGTTACCTTATG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTGCTTTGGTATAACTCTCAAAG
CCTCCGTTCCTTCTGACATACGAGCAGCAGAAAAGCCCTTGGAATGCAGA
AGTCAGCAAACAAGCAATGGGTAGGAAAGGCCGAGCAGGAGTCAGGGACA
CGGATGAGGCTGTGTCTCTGAGGCTGCTTGTGTCCCGCTCCCAGCAAAGT
CAAACAAGTCTCAGGCCCCACTGCCTGGTGCGGCAGTGGATACCTGCATA
TCGGCATAAGATCCTCCAGCTTTCATGATTACAATCCCCTTGTATAGACA
CACGCATGTATGTCTTATTTTTTACACACCCCCGCCCATCTGACTATGCT
GGGAGTCATCTGTGGGTTTACCCCTCACCAACCTATCGAAAGACGATGGA
AGCACTTCCTTAGTATCCCTGCCCATCTGTTTCCCCAAGGCACACCTAGG
TTCTTTCTTCCCAGATACACACGAATGAAGTAGTCTCTTCCGAGATGCTT
ACGGGAGGAGGCACAAGGCATCAGAGCCTTCATTGGNAAATATTAGTTTC
CTTCCCCTCCCTGTGTCTAAGGCGAGTTGTACTGAGTGAATGAGGCTTCG
GCAGCTCAGAGTGCAAAAATAACCCTGCCTGTGAGGATGTGGTCTCTTTT
CCCCCAAGTGTGGACCAGATTGTCTGGTTGCCGGGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_m17.g1 MSMg01no311_m17.g1 CHROMAT_FILE:
MSMg01no311_m17.g1 PHD_FILE: MSMg01no311_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:44 2005
         (292 letters)



>mm_chr11_90226420_90227111
          Length = 692

 Score =  462 bits (239), Expect = e-135
 Identities = 270/289 (93%), Gaps = 14/289 (4%)
 Strand = Plus / Minus

                                                                       
Query: 2   gtgctttggtataactctcaaagcctccgttccttctgacatacgagcagcagaaaagcc 61
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 580 gtgctttggtatgactctcaaagcctccgttccttctgacatacgagcagcagagaagcc 521

                                                                       
Query: 62  cttggaatgcagaagtcagcaaacaagcaatgggtaggaaaggccgagcaggagtcaggg 121
           ||||||||||||||||||||||||||||||              ||||||||||||||||
Sbjct: 520 cttggaatgcagaagtcagcaaacaagcaa--------------cgagcaggagtcaggg 475

                                                                       
Query: 122 acacggatgaggctgtgtctctgaggctgcttgtgtcccgctcccagcaaagtcaaacaa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 acacggatgaggctgtgtctctgaggctgcttgtgtcccgctcccagcaaagtcaaacaa 415

                                                                       
Query: 182 gtctcaggccccactgcctggtgcggcagtggatacctgcatatcggcataagatcctcc 241
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 414 gtctcaggccccactgcctggtgcggcagtggatacctgcatatgggcataagatcctcc 355

                                                            
Query: 242 agctttcatgattacaatccccttgtatagacacacgcatgtatgtctt 290
           ||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 354 agctttcatgaatacattccccttgtatagacacacgcatgtatgtctt 306


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)