BAC Information

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BAC

Clone NameMSMg01-312I13
Chromosome11 (Build37)
Map Location 25,075,147 - 25,075,474
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042282
Downstream gene5730522E02Rik, LOC100042328
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312I13.T7 (MSMg01no312_i13.b1)MSMg01-312I13.TJ (MSMg01no312_i13.g1)
ACCAG434725AG434726
length723724
length of high quality
(start - end)
331 (377 - 707)244 (71 - 314)
definitionCHROMAT_FILE: MSMg01no312_i13.b1 PHD_FILE: MSMg01no312_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:38 2005CHROMAT_FILE: MSMg01no312_i13.g1 PHD_FILE: MSMg01no312_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTCCAAAATTTGCTTGGCTTCCTGGTAAGCCTTCGGTCTCCT
TCCCACTATTTTGCTTCATCCCTATTTCACCTAATCAGGATCTCAAATAT
CAAGCTTATAGAATGAATTCTGGAAAATGTTCTAACGTGCATAGAGGAAT
GTCTTAGTAGGGGAAAAGGCTCTTTTCTCCTTCCTCTGTGATGCTTTAAG
ATCTTTACTAGGTCAGTGGCTCATGGGAGCCACAAGCCTCTTAGGGAGCT
AATCTGCCCTTCTAATCCTGTCACCCTTCAACTTAGTGCCACTCAGTAAT
GATGTGTGTTGTCTGCCAGTGCTATCATTCTATACAGTGAGGGCAGCTCA
CTTCAGCATCTTCCCCTGTACATGTTTGGTAATTACAGCTGAGAATCTAT
GAAAGGCTGGCTTCCAGGTGGGCCTTACAGGATACTTCATAGCAAGTACT
ATTTTGGTTTTCATATAAGTCAAAATTCAATAACTATGGCAGCAAAACAT
CAGGAAAAACCTTGTTAGCATCATTTAGGAAAAGGCTGTGAAGTCTGCAC
CCTTGTTTTTAGCCAAAGCCACATTCACCAAAGGTGCCACTCTACCCAAA
ATCTTCTTTATCCTACAATGGATCTTTTTTTAAAGATATCTGATCATTTA
ATTGCAGTTGACAGACTATTAAN
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTGACAAAAAAAATTCCAACTGTTTCTGAAAAGATCCCAAA
AATGCATTTGTTATTTTGAGCTACATGCTGGTACATAGAGGTGTTCTAGG
TATTAACAATAGTAAAATGAACAATCTATCTGAAAAGCACTGGAATGTTC
TCTACCTTGTAGTATCAACTATTAAGACAGTTTAATTCTTTATGTCAAAA
TAAACATATCCATCCTATTAGTAAGCAATTTTCCTTTCTTCTGTAATTAA
TAATAAATATATATTNACTGACATATACTAAAATATCATTCTGTTTTATT
TATATGTATATGTTTTCCGCATGTGGCTGTTATTGGATACTATAGGCCAT
GTAAAAATTTCTCAAGTTAAAAGGACAACCAGTGGAAAGTTCAAGAAACC
CAGCTATGCAATAGTTGTATACATGTATTGTATACACAGGTGTGTACACA
TGGGTGTGGCTTTTTGGGGGCTTAATATTAATATAAACACACCTAAACAT
ATAAGGACAGAGTTTTTGTGAGACAAGCTTTTGCTAAAGAGCCCAGACTA
TACTTGTCCTGCAACCCCCTTGTCTCAGCCCTGTTTATGCTGACATTGAA
GGTATGCGCTACCACACAGGGCAGCGAGAGGTCATAAGGAAAAGAGAAGC
CACTGTGGCTGTGATTGTTTTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_i13.b1 MSMg01no312_i13.b1 CHROMAT_FILE:
MSMg01no312_i13.b1 PHD_FILE: MSMg01no312_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:38 2005
         (331 letters)



>mm_chr11_25074947_25075677
          Length = 731

 Score =  603 bits (312), Expect = e-177
 Identities = 324/328 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctatacagtgagggcagctcacttcagcatcttcccctgtacatgtttggtaattac 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 attctatacagtgagggcagctcacttcagcatcttcccttgtacatgtttggtaattac 260

                                                                       
Query: 61  agctgagaatctatgaaaggctggcttccaggtgggccttacaggatacttcatagcaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctgagaatctatgaaaggctggcttccaggtgggccttacaggatacttcatagcaag 320

                                                                       
Query: 121 tactattttggttttcatataagtcaaaattcaataactatggcagcaaaacatcaggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 tactattttggttttcatataagtcaaaattcaataactatggcagcaaaacagcaggaa 380

                                                                       
Query: 181 aaaccttgttagcatcatttaggaaaaggctgtgaagtctgcacccttgtttttagccaa 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaccttgttagcatcatttagggaaaggctgtgaagtctgcacccttgtttttagccaa 440

                                                                       
Query: 241 agccacattcaccaaaggtgccactctacccaaaatcttctttatcctacaatggatctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 441 agccacattcaccaaaggtgccactctacccaaaatcttctttatcctacaatggatctg 500

                                       
Query: 301 tttttaaagatatctgatcatttaattg 328
           ||||||||||||||||||||||||||||
Sbjct: 501 tttttaaagatatctgatcatttaattg 528


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)