BAC Information

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BAC

Clone NameMSMg01-313O08
Chromosome11 (Build37)
Map Location 46,605,737 - 46,606,286
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC633082, Clint1, Lsm11, Thg1l, Sox30, LOC667037, LOC100039624, Adam19, 9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk, OTTMUSG00000005491, Crsp9, LOC100039730, Havcr2, LOC210535, LOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1
Downstream geneTimd4, Sgcd, LOC628753, LOC100039647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313O08.T7 (MSMg01no313_o08.b1)MSMg01-313O08.TJ (MSMg01no313_o08.g1)
ACCAG435692AG435693
length1,2951,293
length of high quality
(start - end)
634 (128 - 761)378 (85 - 462)
definitionCHROMAT_FILE: MSMg01no313_o08.b1 PHD_FILE: MSMg01no313_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:07 2005CHROMAT_FILE: MSMg01no313_o08.g1 PHD_FILE: MSMg01no313_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGTTTTTNNNNNNGATCAGTGGGCGCTATAGACTCCTATANGGAGAGGA
TCCGCGGAATTCTACCTGAATTCAATCCCCATAACAACTTCCAAGAGTTG
TTCTCTGACTTTCACAGGTCTATCATGTAATGTATGCCCCTACAGTGTCA
CACATAAACACACACCATACACACACACAATAATAATAATAATAATAATA
ATAATAATAATAATAATAATAATAATAATAACTCATGGTAAGGAATTGCC
AGACGAGGTTTAGCTCAGGGGACATAAACAAGATCATGTGTTCCATCCCC
AGCATCAAACACAGAACAATATTATCATTTTATGACTACTTTAAGTAAAA
TGCAATGACAGTGGTTATGTATGTTCTAATATTTTAGAGATACATAACTA
AACACTTTAAAAAGAGTCTTCACCTTAAAAAGTGTCTTAGTCCCTAAAAA
TTATCTATAGCTTGCTTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT
TTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTGT
TCTCTATTAAAATTTGATGTCCTTTAGCTGCATCTTCATTTCCTCTAAAG
GATTCTTTCTTTTTTTAATATTTTTATTAGGTATTTTCCTCAATTACATT
TCCAAAGCTATCCCAAAAGTCCCCCATACCCTCTCTCCCACTCCCCTACC
CACCCACTCCCACTTTTTGGCCCTGGCATTCCCCTGTACTAAGGCATATA
AAGTTTGCATGTCCAATGGGCCTCTCTAGTGCAAAAAAAAAATGGAATCA
TATTTAGTAAAATCTTTATAGTTGACCCAAAATTTAATGACTAAATTTAG
ACAAGTATAGTATCATTTCAATGCCTTCTAGTCTCTGGTCTGAAAAGATC
AGTTTAATTTTTTTAAAGATTTATTTAATTTATTTTACGAAAAGAACAAC
CTATAGTTGTCTTCACACCCCCCCAAAGAAAAAAATCAAATCCCCTTACA
AATTGTTTTTATCCCCCCTGTGGTTGTCTGGAAATATAACCTCCAATTTT
TGTAAAAAAAAATTATTCTTTTAAACAATTAAACCATTTCTCCACCCCAA
ATTTTTTTCTTAATCTCCTCTTAATTTCATCCACAATCCCTGCAAAATTC
TTTTCTTTTTCTTGTCTATACCATTGCTTTTTTCTTTCTATCAACTAAAA
AATTTTTAACATTCATATCCTATCGTCTTATCTCTTTCTATAATTCTCTT
TATTACATCTCTCATTTATTCTCTTTAATCATCTCTCCTATATTC
TTAACAGTTTNNNNNNNGATGACGGCAGGCTGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTGACAAATGGAGA
TTCCCTACAGAAACTTAAAAGAACAGCCAAGTTACCTCCGCATGCAAGAA
TTTACTAAGGCCTAGGAAATAGGGGGGTTGTGATATTGTATTATTCATGA
GAAGGTCAGCTAGAGCAGAGCCCCCTGGTGCTAGCTTTCACAAGGCTCAA
AGGAGTAGCACAAATTGTGACTAGGGTGTAAAATCCTTACCTGTCATCAG
CTGACCCTAGGCAGGGCTGTTTTATCTTTACTGTAAATATTACCTGGTTC
CTGTAAGTCCTTTTGAAGTTATTCCTCTGTTTTGGGTCAGATAACTTCAA
TGTACTTTGCTTGCTGTGACATCCTACTCCTTTGTTTTCTGTATCATATA
AGACTGGTGTTCTTTTTTTTACACCCCCCCTCAGATTCAACACATTCTCT
CAATATAAAGCGGGCATTCGCCAACTCCTTCACTCACTTGCCACCAGAGA
CCCGTTCCACACAAATAGGAGACCCAAAAGGGAGGATAGACTGCGGCAAG
TGGGAATTTCTTTTTTGCCTCTACTTTTTTAGTGGTCTTTGTGATGAATC
TTTGAGTTCTTTGAAGGCCCAGGGACAGTGTCAGCTAACAGCTGTGCACC
AGTTTCCTGGGGAGCCTCACAGATGCATGGGAGCACTCAGACTTCCTGTT
CCCAACACTGCCTCCTGGAAGCCAGACCTGGGCCAGACCTGCTCTCACTG
ACCTCACGCCCTGACCACGACTTGGTTGTACACCTACCCTCACCCATTGT
TGGTATTGTGCTATTCCATTTTGCGCATTTTATGTTCTTCCAGAGGATTT
ATTCAGACATCAAGAAGGCATTCTGTCCTCTGAGTCTCCCTAGGTCAGTG
GGTTTTATTCTGATCCCCATACATAAATCTTCCTGAAGAATTGAACCCTT
TAGGAACCCAGTAATTTGAACCCCTGTAAACGGCCCTTTATGGGGCCCAT
GGAAAGTTTTCCTCTCTTCAAAATTACCTCCCTGAGGGGCGAATGGGCAA
CACTTGCGCATTGTTGGGGGCTTTGATATTTTCTCAAATTTTTCATTCTC
TCTCCCTGTTTTTCCATAGATATTTTAAATGTAGGGTCTCTCACCCTGGG
GAACCGTCTCTCTTTAATATTTGGTGGGGTTCTATAAAATCTCACTCCAT
CCCCGGGGTGCCTTAATCTGATGCTCTTCCTTCTTCTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_o08.b1 MSMg01no313_o08.b1 CHROMAT_FILE:
MSMg01no313_o08.b1 PHD_FILE: MSMg01no313_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:07 2005
         (634 letters)



>mm_chr11_46605680_46606711
          Length = 1032

 Score =  787 bits (407), Expect = 0.0
 Identities = 538/635 (84%), Gaps = 86/635 (13%)
 Strand = Plus / Minus

                                                                       
Query: 1   taatgtatgcccctacagtgtcacacataaacacacaccatacacacacacaataataat 60
           |||||||||  |||||||||||||||||||||||||||||||||||||||| |||||   
Sbjct: 607 taatgtatgtgcctacagtgtcacacataaacacacaccatacacacacaccataat--- 551

                                                                       
Query: 61  aataataataataataataataataataataataataataataactcatggtaaggaatt 120
                                           ||||||||||||||||||||||||||||
Sbjct: 550 --------------------------------taataataataactcatggtaaggaatt 523

                                                                       
Query: 121 gccagacgaggtttagctcaggggacataaacaagatcatgtgttccatccccagcatca 180
           |||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 522 gccagaggaagtttagctcaggggacataaacaaggtcatgtgttccatccccagcatca 463

                                                                       
Query: 181 aacacagaacaatattatcattttatgactactttaagtaaaatgcaatgacagtggtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 aacacagaacaatattatcattttatgactactttaagtaaaatgcaatgacagtggtta 403

                                                                       
Query: 241 tgtatgttctaatattttagagatacataactaaacactttaaaaagagtcttcacctta 300
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 402 tgtatgttctaatattttagagatacataactaaacactttaaaa--agtcttcacctta 345

                                                                       
Query: 301 aaaagtgtcttagtccctaaaaattatctatagcttgctttttctttctttctttctttc 360
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||      
Sbjct: 344 aaaagtgtcctagtccctaaaaattatctatagcttgctttttctttctttctt------ 291

                                                                       
Query: 361 tttctttctttctttctttctttctttctttctttctttctttctttctttttttttttt 420
                                                   ||| ||| ||||||||||||
Sbjct: 290 ----------------------------------------ttt-ttt-tttttttttttt 273

                                                                       
Query: 421 tgttctctattaaaatttgatgtcctttagctgcatcttcatttcctctaaaggattctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tgttctctattaaaatttgatgtcctttagctgcatcttcatttcctctaaaggattctt 213

                                                                       
Query: 481 tctttttttaata-tttttattaggtattttcctcaattacatttccaaagctatcccaa 539
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 212 tctttttttaatattttttattaggtattttcctcaattacatttccaaagctattccaa 153

                                                                       
Query: 540 aagtcccccataccctctctcccactcccctacccacccactcccactttttggccctgg 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 aagtcccccataccctctctcccactcccctacccacccactcccactttttggccctgg 93

                                              
Query: 600 cattcccctgtactaaggcatataaagtttgcatg 634
           | ||||||||||||  |||||||||||||||||||
Sbjct: 92  cgttcccctgtactggggcatataaagtttgcatg 58


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1032
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1022
Effective search space:   637728
Effective search space used:   637728
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)