BAC Information

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BAC

Clone NameMSMg01-313P23
Chromosome11 (Build37)
Map Location 86,393,473 - 86,394,165
singlet/doubletsinglet
Overlap geneLOC100043687
Upstream geneBcas3, Tbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1
Downstream geneTmem49, Ptrh2, Cltc, Dhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e, Rad51c, Tex14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313P23.T7 (MSMg01no313_p23.b1)MSMg01-313P23.TJ (MSMg01no313_p23.g1)
ACCAG435764AG435765
length1,1981,221
length of high quality
(start - end)
693 (90 - 782)---
definitionCHROMAT_FILE: MSMg01no313_p23.b1 PHD_FILE: MSMg01no313_p23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:20 2005CHROMAT_FILE: MSMg01no313_p23.g1 PHD_FILE: MSMg01no313_p23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCAAGTTTTNNNNAATGTCACTGGGCGCTATAGACTCCTATAGGGAGAGG
ATCCGCGGAATTCTGGGATGTGGTTTCCATTAAAATAAAGGCCAATTAGT
AGAAATGGGCTGGAGTGTGTTCAAGCACTTCCTGTCTGTCCTTTGAATCG
TTTGGAAATGGTTAACAAATAGGTTGGACACCTGGCTCCCAATGAGAGAT
GGGAATTTCCATGTAAAGCTCCAACTGTAAAACTCTTCCTTCCCCAAGCA
ATTCAAACCAGGACTCAAGTGCGCCCTAATGATCCAAAGTCCTAAGCAGG
CTTGACTAAGTCAGCAACGGTCGCCGGCCACAGATTGGAAGAAACCCTTT
ACATGTAAAAAGGCTATGCTGAGAGGGACAGCCGTGTTTCCAGCGTCACT
GGCTGGTGGATCTGGATGACAAACCCTCAAAAGTTGCATTTCTGTCTGTT
CCCAGACCCAGTTAGCCACTTGCAACAGACTCACTCTCACAGGTTGGGAG
AGTTTGCATAAATTCAGATCTGAAGTGAATTCTGATGGGGAGCAGCAGCC
ATCCAAAACAACCTCCTTTTTGAGTTCCCATTTATGCCCACACAGATCTG
TGCAGGTCCAGTGGGGTCAAAGAACAAGAACAGTTGGCACCTGCCTATCC
CTGCCCTGTGCAATTCTCAAGGCTTGAGTAAGCAGCTGCGAATCACAGGC
TTTGTAAGATCTCTTCCCTTCCCGGAACAGGCTAAAAATGCAAATGCACT
AGGAAGGTTATTTGCTGCACTGCGTGGCCTCACCTCTAAGGCAAACATAT
TACTTCAGGTGAACTCTTGACCCTGTAGGGAAAGGACTGGAACCCACACC
CCTGGTCACCACGGATAATCCTATGTAAGGTATGCTATGTGGTCTCTTAA
AGAATAGATGTTGTGTTTAAAAAGTACTCCTAAATTTACCTTATAACCAA
TCTTATTAATTCCTCCGAAGCAGGTCAAGCCCGGAGGCTGTGGTTACCTG
TCTAAAATCCTGAACACCCCTATGGCCCAAGGCAGGAACAATCCCCCTCC
TTGGGTTCACCTTATTTCCTTATCCCCTGGCCCCCCCCCCCCCAGATTTA
TTTTTTAAAAAAAAAGCCCCTCCCCCTTTTTTTTTGTGCCCCATATAAAA
AAAGATCCCGCTCCCTACTTTTAAACGTGCGCCCCTTATCCTTTTCTC
NNNNGGAGGAGGAGGGTAGGGGCCGTGGGCCGTCAATTTAAGGGGAAGAA
TAAAAGGAAGGGGGAGAGCCAATGAGGGGGGNNNNNGNNNGNGNGGNNGG
GNNNNNGNNCCTTAAAAAGAGCCNGGNNNNGNNNGGNNNNNNNNNNNNNN
NNNGGGGGGNGGGGGGGNGGGGGNNNNGGGNGGTTTCGAGGGGGCCNCCN
NNNNGGGGNGNNNNNGGNNGGGNGNNGGGGGNNNGGGGNGNNGNNGGCNC
NNNGGGNNGGGGGGGGGNNNNNNGNGNGNGNGGGGGGGGNGCNGNGGGNN
NGGGGNNGGGGGGGGGNNGNGNNNNGGGGGTTGNGGNNNGNGGNGNNNNG
NGGNGGGGNGGGGGGGGGGGGNGGGGNGNNGGGGGGNNGGGGGGNNGNGG
GTTTTTTTNGGGNGNGNGNGGNGNGGGNGNNNGGGGNGGGGGGAAGAACG
CCCCCGCGGGNGCCCGCCCCGCCCNNNGGNGNGNNCGAGAAAAAAAAAAG
GGGCGGGNCNNCNANGGGNNCCCAAAAGGCCAGGGGGACGGGGGGGGGGA
AAGGGGGCGGAAAGCCCAGANGGGGAAGANCCGAGGAAAAGAGGGAAAGG
GGCACGGGGAGGGGAGAAGAGGCGGGAGAAGGGGGCGAGAAGAGNGAGAA
AGGAAGAAGGAGAGGANCCGGGACCCCGGGGCGGGGAAAAGAGAAGAAGG
GGGGAAGGGGGGNNCCGGNNNNGGCCCCCCCGGAGGGCGGGGAAAGAAAA
GAGGGGAAGAGCGGGGGGGGGGAAAGGTGGGAGGCGAAGGGGGGGGGGGA
GGGGAAAGGGGGAGGAGGGNGGCGCAGAGAAGGGGGGGGGGGGAGGGNNN
NCGGNGGGGGGGGCGGGGGGGGGGGGGGGGCCGGGAGGGGGGGGGGGGAG
AAGGGGCGGGCGGGGGGGGGAGGGGGGGGGAGGGNGGGGGGGGAGGCGGG
GGGAGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
AGGAGGGAGAGGGGGGGGGGGAGGGGGGGGNGAGCGGGGGGGGGAGGGGG
GGGAGGGAGGGGGGGGGGGAGGGGGCGGGCGGGNGGGGGGGGGGGAGGGA
GGAGCAGGGGGAGGGGAGGGGGGGGGGGGGGGAGAGAGGGAGGGGGGAAG
GGGGGCGGAGGAGGAGGGGGGGCGGGGGGGGGAAGGGGGGGAAGGCGGGA
GGGCGGAGAGGGAGGGGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_p23.b1 MSMg01no313_p23.b1 CHROMAT_FILE:
MSMg01no313_p23.b1 PHD_FILE: MSMg01no313_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:20 2005
         (693 letters)



>mm_chr11_86393273_86394365
          Length = 1093

 Score = 1270 bits (657), Expect = 0.0
 Identities = 684/693 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggccaattagtagaaatgggctggagtgtgttcaagcacttcctgtctgtcctttgaatc 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 ggccaattagtagaaatgggctggagtgtgtccaagcacttcctgtctgtcctttgaatc 260

                                                                       
Query: 61  gtttggaaatggttaacaaataggttggacacctggctcccaatgagagatgggaatttc 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 gtttggaaatggttaacaaataggttggacacctggctccaaatgagagatgggaatttc 320

                                                                       
Query: 121 catgtaaagctccaactgtaaaactcttccttccccaagcaattcaaaccaggactcaag 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 catgtaaagctccaactgtaaaactcttccttccccaagcaattcagaccaggactcaag 380

                                                                       
Query: 181 tgcgccctaatgatccaaagtcctaagcaggcttgactaagtcagcaacggtcgccggcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 tgcgccctaatgatccaaagtcctaagcaggcttgactaagtcagcaacggccgccggcc 440

                                                                       
Query: 241 acagattggaagaaaccctttacatgtaaaaaggctatgctgagagggacagccgtgttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagattggaagaaaccctttacatgtaaaaaggctatgctgagagggacagccgtgttt 500

                                                                       
Query: 301 ccagcgtcactggctggtggatctggatgacaaaccctcaaaagttgcatttctgtctgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccagcgtcactggctggtggatctggatgacaaaccctcaaaagttgcatttctgtctgt 560

                                                                       
Query: 361 tcccagacccagttagccacttgcaacagactcactctcacaggttgggagagtttgcat 420
           ||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 tcccagacccagccagccacttgcaacagactcactctcacaggttgggagaatttgcat 620

                                                                       
Query: 421 aaattcagatctgaagtgaattctgatggggagcagcagccatccaaaacaacctccttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaattcagatctgaagtgaattctgatggggagcagcagccatccaaaacaacctccttt 680

                                                                       
Query: 481 ttgagttcccatttatgcccacacagatctgtgcaggtccagtggggtcaaagaacaaga 540
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 681 ttgagttcccatttatgcccacacagatctgggcaggtccagtggggtcaaagaacaaga 740

                                                                       
Query: 541 acagttggcacctgcctatccctgccctgtgcaattctcaaggcttgagtaagcagctgc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 acagttggcacctgcctatccctgccctgtgcaattctcaaggcttgagtaagcagctgc 800

                                                                       
Query: 601 gaatcacaggctttgtaagatctcttcccttcccggaacaggctaaaaatgcaaatgcac 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gaatcacaggctttgtaagatctcttcccttcccggaacaggctaaaaatgcaaatgcac 860

                                            
Query: 661 taggaaggttatttgctgcactgcgtggcctca 693
           |||| ||||||||||||||||||||||||||||
Sbjct: 861 taggtaggttatttgctgcactgcgtggcctca 893


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space:   739689
Effective search space used:   739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)