Query= MSMg01no315_b19.b1 MSMg01no315_b19.b1 CHROMAT_FILE:
MSMg01no315_b19.b1 PHD_FILE: MSMg01no315_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:29 2005
(701 letters)
>mm_chr11_54228645_54229745
Length = 1101
Score = 1156 bits (598), Expect = 0.0
Identities = 607/610 (99%)
Strand = Plus / Minus
Query: 92 caagtcattgcttggagacacctataataaaacaatactgaaagaaagcacacagatcca 151
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1101 caagtcattgcttggagacacctataataaaacaatactgaaagaaagcacgcagatcca 1042
Query: 152 ttcacaagaataagtttggagcattcattatatgggatgccatggttccaggagactaag 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 ttcacaagaataagtttggagcattcattatatgggatgccatggttccaggagactaag 982
Query: 212 tttctgtgaacttttcacctcaggactgtgtccaggtttctaggcctgtcatgcaagtca 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 tttctgtgaacttttcacctcaggactgtgtccaggtttctaggcctgtcatgcaagtca 922
Query: 272 ctactggagtgggtgtagcacactccttatgtgaatcatatacatcctcttttgtatgga 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 ctactggagtgggtgtagcacactccttatgtgaatcatatacatcctcttttgtatgga 862
Query: 332 tgctatttcataccaacatcggttttctgacttctttcaacagccccctcccatctcaaa 391
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 861 tgctatttcataccaacatcggttttctgacttctttcaacagtctcctcccatctcaaa 802
Query: 392 cacagaacagagaattgtcctaaggggctatcagatcatttccttcttggaagatttctg 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cacagaacagagaattgtcctaaggggctatcagatcatttccttcttggaagatttctg 742
Query: 452 accattcagggtagaggttctgtgctgcaaacagctaaatgaagtgaacatatctgtaga 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 accattcagggtagaggttctgtgctgcaaacagctaaatgaagtgaacatatctgtaga 682
Query: 512 tgctgagatgccctgctcaaggatccttgtctttcagacaagagactgaaagattctgct 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgctgagatgccctgctcaaggatccttgtctttcagacaagagactgaaagattctgct 622
Query: 572 cttagctccaaagatctaatattgttagcctggaaggtcagccatatcatataacaatga 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttagctccaaagatctaatattgttagcctggaaggtcagccatatcatataacaatga 562
Query: 632 tttcacagctgacaagcactacttataactgagactgttcaattatctttccacatctat 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttcacagctgacaagcactacttataactgagactgttcaattatctttccacatctat 502
Query: 692 aatactaact 701
||||||||||
Sbjct: 501 aatactaact 492
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space: 753881
Effective search space used: 753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no315_b19.g1 MSMg01no315_b19.g1 CHROMAT_FILE:
MSMg01no315_b19.g1 PHD_FILE: MSMg01no315_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:29 2005
(556 letters)
>mm_chr11_54146823_54147778
Length = 956
Score = 1011 bits (523), Expect = 0.0
Identities = 549/559 (98%), Gaps = 3/559 (0%)
Strand = Plus / Plus
Query: 1 catgtgatcatggagggacgttctcgctttttgcccctggataaatgtcatcatggttac 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 catgtgatcatggagggacgttctcgctttctgcccctggataaatgtcatcatggttac 260
Query: 61 tatcaggcaataaagtgtcccatggtcatgatcacagaggttgaattcagagatgtctag 120
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 tatcgggcaataaagtgtcccatggtcatgatcacagaggctgaattcagagatgtctag 320
Query: 121 tcaaacgaggaaccagtaggcttctccaaggcctccctgcccctgtgggcttggcatgga 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 tcaaacgaggaaccagtaggcttctccaaggcctccctgcccctgtgggcttggtatgga 380
Query: 181 gcaaggacacaatcccccatccttctcccctctctgcttcttctcctgctccctagcctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaaggacacaatcccccatccttctcccctctctgcttcttctcctgctccctagcctt 440
Query: 241 gttagtgggtgctctgccctctcctaccaagtttgacagggggatcaagaacaaggaagt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttagtgggtgctctgccctctcctaccaagtttgacagggggatcaagaacaaggaagt 500
Query: 301 gggttgtggaagttggaggatggtcgattgagtatgtctaaagctcacactttctttcac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggttgtggaagttggaggatggtcgattgagtatgtctaaagctcacactttctttcac 560
Query: 361 tgatggatgcttttctgagttctgatgtagggatctgggcttctgaaccctctgccacca 420
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 561 tgatggatgcttttctgagttctgatgtagggatcagtgcttctgaaccctctgccacca 620
Query: 421 tagctcctaactctgtgcacacttgactccctcctccaggtttatagggagagagtgtgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagctcctaactctgtgcacacttgactccctcctccaggtttatagggagagagtgtgg 680
Query: 481 atcagttgcctttctcattgatatgacaaaagc---ttaaaggaggaagggagggaggga 537
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 681 atcagttgcctttctcattgatatgacaaaagcagcttaaaggaggaagggagggaggga 740
Query: 538 gagagagggagggagggag 556
||||| |||||||||||||
Sbjct: 741 gagagggggagggagggag 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
