BAC Information

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BAC

Clone NameMSMg01-315D01
Chromosome11 (Build37)
Map Location 119,238,254 - 119,238,736
singlet/doubletsinglet
Overlap geneSlc26a11
Upstream geneLgals3bp, Cant1, C1qtnf1, D230014K01Rik, D11Bwg0517e, Enpp7, Cbx2, Cbx8, Cbx4, Tbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh
Downstream geneLOC672511, Rnf213, A730011L01Rik, Nptx1, 4932417H02Rik, Chmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315D01.T7 (MSMg01no315_d01.b1)MSMg01-315D01.TJ (MSMg01no315_d01.g1)
ACCAG435902AG435903
length7151,175
length of high quality
(start - end)		487 (45 - 531)---
definitionCHROMAT_FILE: MSMg01no315_d01.b1 PHD_FILE: MSMg01no315_d01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:35 2005CHROMAT_FILE: MSMg01no315_d01.g1 PHD_FILE: MSMg01no315_d01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAAATACCGCGGAATTC
CCAGCCCCATCTCTCTTGCTTGCTATCATTGGCGCTCCTGAGGGAGGGCG
TTTCTCTATCTCTCCTGAGTATGGTATGTTGGGGACTCTGCTGCCAGCTC
CCACTCCCTCCTACTGTACCCCATATGCTAGCCTTGGGTCAAGGATCCCT
CCTGGTGCAGTGATCGAAGCCTAGAAGACTCTCCTGTCCTGTCTGCTTCT
AATGTTCACCCCCTACTCCCATTCCAGGTGTCAGAAGGACAGATTTTTGT
TCTGCAGCCGGCCAGCGGGTTGTACTTCCCTGCAATTGATGCCCTCCGAG
AGGCAATAACGAACCGGGCACTGGAAGGTATGTGAGCCAGTCAGGATGAG
CACAGAGCAGCACACACCCCACCAGTCCCCTGCACCACAGCCTTGGCACC
CTCAGGCCCGGCCCAGTGGTCAGGAAGACATGCACCCGCTTTCACGATTC
AGGCGTCTTTGAGTAGTGTCTGCTGCAGATAGGTCAGCCCCCACTGGCCA
GTAGTCCTGTGACTCCCCTACAGCCTGTCAGCAAAGGCCATGTTTGCTTC
TGTTCCTGTCTGGGGAACTAACGTTCAAGGGAACCTAAGAAGGAAGCTGC
TTTCTCCAGATACCCATTCTGGTCACCCTGGCCCCCGAGGTGGGTGACCC
CCCCGGGCAATAGCC

GCGCTCTTGCCTCGCCGCACTACAATTATACGAGCAAGCACAAGATATCG
CCATAATAGGACCCCCGCATACCCATGCTTACGACGTTTATTGCGATAAT
CGCAGTTGAACGGGGCGGCTTCTTCCACTCGCCAATGAGTTAGTATGACC
GCAATATGGCGTAACGAACCACAGCCCTGTAGCCACTTACGGCGGCCCCT
CGGTTCACCGATTATATACAATAGTATGCTGAGCCGTATATTCGATACTC
AACTAAGATAGCGTTAGCAACGCGCTTAAGAAGCGTACCAGAAGCGTATC
TATCCTATTTTCATTTTGCACCCCCCTATTCACCCATCTAGCCCCGTGAT
ATTCCCCCCGCGATTCCTATCCGCGCCACTTACCTCCCGTGGTCTACTGC
CCAGCGCGAACCCTATTTGCCAAGCGTGCTTCTTATCACACTATATCTTA
AGTGTACTGAGAGCCACGCTCGGTGGTTGTCATGGCGAGTAATTTCGACC
TCTACGTGACTCTACACAAGTTACCTGACGCTATTACCGATCAAGCGCCC
GCGATAATCGATCATACTTTAACACTGAGGACACGATTGACAGTGCCTAC
AGTTGTCATCATGCGCCTTATATCAACGGCGATATCGCGCACGCCCCGTT
TTCTTTTCGCCGCCGCCCCGCCTTTATTTTCTCTTTCGTTACGATTAACG
ATTTACACACTCTCCCCTTTATGCATACTCCTCCCTTATTACGCATCCGC
CCCCTTTTTGTCCGACCCACTTCATTGAGCTTCCCCCTTCAAAATAATTT
TTCACCATCCGTTGTTCGATATACGTCCGCCACTTCCGCTCATTATATTT
TTATGTGGCACGTCCCCTCCGGCTCTCTATTATAACCCGCCGGTTGCACG
TCTGACTACTTTACCGCGCAACCCTTACCCGCGTCGCGGCGGGTCACATA
CTCGAGCTAGCGCCACGCGTTATTCTCCCTTACTGCGAATCGTGGTAGGT
GGAGAATGTACCCCGAGCGTCGGGAATCTTATTTGTCCCCGCTATTAATT
CGAGATAGACGTGGCGAGCGATACATGTTGTGCCGGACGCCCCTGATGAT
ATGTCGAGATCCCAACCGATGGTTCCAATCGCAGAGCGCCAGATACACAG
GGCGAACGAATCGCACTCGGCACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_d01.b1 MSMg01no315_d01.b1 CHROMAT_FILE:
MSMg01no315_d01.b1 PHD_FILE: MSMg01no315_d01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:35 2005
         (487 letters)



>mm_chr11_119238054_119238936
          Length = 883

 Score =  824 bits (426), Expect = 0.0
 Identities = 471/488 (96%), Gaps = 6/488 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaattcccagcccca-tctctcttgcttgctatcattggcgctcctgagggagggcgttt 59
           |||| ||||||||||  ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaatccccagccccaccctc-cttgcttgctatcattggcgctcctgagggagggcgttt 259

                                                                       
Query: 60  ctctatctctcctgagtatggtatgttggggactctgctgccagctcccactccctccta 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||
Sbjct: 260 ctctatctctcctgagtatggtatgttggggactctgctgccagctccca----ctccta 315

                                                                       
Query: 120 ctgtaccccatatgctagccttgggtcaaggatccctcctggtgcagtgatcgaagccta 179
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| 
Sbjct: 316 ctgtaccccatatgctaggcttgggtcaaggatccctcctggtgcagtgatcgaagcctc 375

                                                                       
Query: 180 gaagactctcctgtcctgtctgcttctaatgttcaccccctactcccattccaggtgtca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gaagactctcctgtcctgtctgcttctaatgttcaccccctactcccattccaggtgtca 435

                                                                       
Query: 240 gaaggacagatttttgttctgcagccggccagcgggttgtacttccctgcaattgatgcc 299
           |||||||| ||||||||||| ||||||||||||||  |||||||||||||||||||||||
Sbjct: 436 gaaggacaaatttttgttcttcagccggccagcggcctgtacttccctgcaattgatgcc 495

                                                                       
Query: 300 ctccgagaggcaataacgaaccgggcactggaaggtatgtgagccagtcaggatgagcac 359
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 496 ctccgagaggcaataacgaaccgggcactggaaggtatgtgagccaatcaggatgagcac 555

                                                                       
Query: 360 agagcagcacacaccccaccagtcccctgcaccacagccttggcaccctcaggcccggcc 419
           |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 agagcagcacacactccagcagtcccctgcaccacagccttggcaccctcaggcccggcc 615

                                                                       
Query: 420 cagtggtcaggaagacatgcacccgctttcacgattcaggcgtctttgagtagtgtctgc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 cagtggtcaggaagacatgcacccgctttcacgattcaggcgtctttgagtagtgtctgc 675

                   
Query: 480 tgcagata 487
           ||||||||
Sbjct: 676 tgcagata 683


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 883
Length adjustment: 10
Effective length of query: 477
Effective length of database: 873
Effective search space:   416421
Effective search space used:   416421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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