BAC Information

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BAC

Clone NameMSMg01-315I13
Chromosome11 (Build37)
Map Location 109,745,806 - 109,746,482
singlet/doubletsinglet
Overlap genenone
Upstream geneAxin2, E030025P04Rik, LOC194985, Rgs9, 1700096J18Rik, Gna13, 9930022D16Rik, X83328, Slc16a6, Arsg, Wipi1, Prkar1a, BC029169, 1700012B07Rik, 1700023C21Rik, LOC100041492
Downstream geneAbca8b, Abca8a, Abca9, Abca6, Abca5, Map2k6, LOC100041523
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315I13.T7 (MSMg01no315_i13.b1)MSMg01-315I13.TJ (MSMg01no315_i13.g1)
ACCAG436151AG436152
length731725
length of high quality
(start - end)		685 (47 - 731)342 (74 - 415)
definitionCHROMAT_FILE: MSMg01no315_i13.b1 PHD_FILE: MSMg01no315_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:02 2005CHROMAT_FILE: MSMg01no315_i13.g1 PHD_FILE: MSMg01no315_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCCCAACTTCCGCGGTTTTATTCTTGCTCATGCTTGTGGTTACT
AAGAAAGCATTGTTTAATCCAAAATCCAAAGGCTCACAACTATGTTCTCT
GTTAAGGGTTTTAATCACTTCAACTGCCCAGTTTAAGTTTTTGAACTCTT
GAGCTCACTTTCGTATATCAAGTAAGGTCGAGGATCCAGCTTCATTATTT
CGTCAATGGAAGGCTCTCTTGACTGGTACTGTTTTTGTGCAGGGCAAAGG
TCTAGACACGTCTTGAAGATTTTGTATTTTCCAAATCAGGAAGCTGTTGT
CTGATGTCCAGTGTCAAGCATGTGTTGCTAGAGCCATGAGTTAGACAGTA
GTTGTTCTAGCACCAACCCCCCCCCCACAGACTCGTAAGTTATCAGGACA
TCTTTCCTCTATGGAATTCTGAGGTCTCAGAGTATGCACCAGTGTCCAGG
CCCCTTGGCTATGATATTCACAACTTTTATGCAGATGGAGCTGTTGGCTG
TGGTTGCAGTGGGTGGGTAATGGAATTTGGCTTGCAGAGATCTTGCAACA
GAGCTTTGACACCGAAGATGGATAACGTGACGGTGGGGTCAGTTCACGGT
CCAGTTTAAGAGCTGACAGCAGGCTTTCCTCTGGGAAATCTTTCTCTCTT
TTCTGAATGTCCCAGGCACTCAAAAATATGN

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCAGCTCCTTCTCCTGCACCACATCTG
CCTGTATAATGCTATTCTTCCTGCCATGATGATAATGGACTGAATCTCTG
AAATTAAACTCCAATTAAATGTTTTTCTTTATAAGAGTTGCCTTAGCCAG
GCATGGTGGCACATGCTTTTAATCCCAGCACTCAGGAGGCAGAGGTAGGC
GGGTTTCTGAGTTCGAAGTCAGCCTGGTCTATAACGTGAGTTCCAGGACA
GCCAGGGCTATACAGAAAAACCCTGTCTAGAAAAAAAAAAAAGAGTTGCC
TTAGTCATTTTGTCCCTTCACGGCAATGGAAATCCTAAGACAGAAATTGG
TATCAGGAGTGGCCCCCCCCCCGCGATAGTCCTGACTATATTTTTGTTTG
GAGGAGTGTAAATTTTGGAACTTTACATTGGGAAATCAGTGTAATGCTTT
AAATGAAGCTTAATGGGCCATACTAGTAGAAACAGGAAGACAGTGGTGCT
GAGGGTGACTTGAATTGTGGTTCTATGGTTCAAGAAGATTGAGAGGAGAA
GAATTTTATCATGTGGTCTAGAAACTGTTCTGATATTTTGTCGAAGAATG
TATCTGGTTTCTGTCCTTGTCTGAAGAGTCAGCTTGAGGCTAAAATTAAG
AGATTTAAATTAATTGCATTGACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_i13.b1 MSMg01no315_i13.b1 CHROMAT_FILE:
MSMg01no315_i13.b1 PHD_FILE: MSMg01no315_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:02 2005
         (685 letters)



>mm_chr11_109745599_109746683
          Length = 1085

 Score = 1166 bits (603), Expect = 0.0
 Identities = 660/679 (97%), Gaps = 2/679 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattctcccaacttccgcggttttattcttgctcatgcttgtggttactaagaaagcatt 65
           ||||||| || |||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 aattctctca-cttctg-ggttttattcttgctcatgcttgtggttactaagaaagcatt 265

                                                                       
Query: 66  gtttaatccaaaatccaaaggctcacaactatgttctctgttaagggttttaatcacttc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gtttaatccaaaatccaaaggctcacaactatgttctctgttaagggttttaatcacttc 325

                                                                       
Query: 126 aactgcccagtttaagtttttgaactcttgagctcactttcgtatatcaagtaaggtcga 185
           ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 326 aactgtccagtttaagtttttgaactcttgagctcacttccgtatatcaagtaaggtcga 385

                                                                       
Query: 186 ggatccagcttcattatttcgtcaatggaaggctctcttgactggtactgtttttgtgca 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ggatccagcttcattatttcgtcaatggaaggctctcttgactggtactgtttttgtgca 445

                                                                       
Query: 246 gggcaaaggtctagacacgtcttgaagattttgtattttccaaatcaggaagctgttgtc 305
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 446 gggcaaaggtctagacacgtcttgaagattttgcattttccaaatcaggaagctgttgtc 505

                                                                       
Query: 306 tgatgtccagtgtcaagcatgtgttgctagagccatgagttagacagtagttgttctagc 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tgatgtccagtgtcaagcatgtgttgctagagccatgagttagacagtagttgttctagc 565

                                                                       
Query: 366 accaaccccccccccacagactcgtaagttatcaggacatctttcctctatggaattctg 425
           |||||| |  |  | | |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 566 accaactcttcttctagagactcgtaagttatcaggacagctttcctctatggaattctg 625

                                                                       
Query: 426 aggtctcagagtatgcaccagtgtccaggccccttggctatgatattcacaacttttatg 485
           ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 626 aggcctcagagtatgcaccagtatccaggccccttggctatgatattcacaacttttatg 685

                                                                       
Query: 486 cagatggagctgttggctgtggttgcagtgggtgggtaatggaatttggcttgcagagat 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 cagatggagctgttggctgtggttgcagtgggtgggtaatggaatttggcttgcagagat 745

                                                                       
Query: 546 cttgcaacagagctttgacaccgaagatggataacgtgacggtggggtcagttcacggtc 605
           ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 746 cttgcaacagagccttgacaccgaagatggataatgtgacggtggggtcagttcacggtc 805

                                                                       
Query: 606 cagtttaagagctgacagcaggctttcctctgggaaatctttctctcttttctgaatgtc 665
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 cagtttaagagctgacagcaggctttcctctgggaaatctttctctcttttctgaatgtc 865

                              
Query: 666 ccaggcactcaaaaatatg 684
           |||||||||||||||||||
Sbjct: 866 ccaggcactcaaaaatatg 884


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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