TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCTTATATCCTGTTTTATAGTGGTGGCTTCTACTTTTACAGGAAA
GCATCTGAGTCTTTTCTCTTATAAGCTTCTATGGCCATAGCCTGTCCTTT
TCTTGTGAACTAATTTATCACTGGATCAGGAAACCTACAGAGTCCGATTG
ATTGACACCCTAATTTTCTCAAGATTGAAGGATAAAGTACAGGGGGAAAT
GAAACAGCTGCTTACAAGCTTCTTTTTAAACGCACCAGCTCCTCACTTGA
CCCCACATGGTAACGAGCAGTAGATGAGAGCATGACATGCTGGCCTTCAT
CTTGTATCTGCCTGTCTCCTTTACTTTAGATAAAGGCACACTGGAAAGCC
CTTGTCCTAAGTCGACTGTCACCTGGGATTCCTGGAAGAGCAAAGCCGTA
CAGGCCAGAAAAATTTTGTCACATCCATCAAGGCAAGACTATATCTTGGA
ACATAAGTGATGCTCCTGCAGGGGCCAGAAAAGTCAATAGCAGTATAGAT
TATTTCAGAATTCTTTGTATAACTTTGTATAACCAGATCTCAGACAAGTT
TCAACCAGACCACACCCTGAGGAGAGGTGTTTAATAGTGTTTACAATTTG
CACTAGTTTTTGCTCTACGTATTGGTAAAGCTCAGTTATTTATTTTTGCT
TCCATTTAAAATTTGTCTTGTCCTGTAAC

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCATGAAT
GGGTGTTGGATCTTGTCACATGCTTTTTCTGCATCCAACGAGATGATCAT
GTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTGATGGATT
TTCGTATATTAAACCATCCCTGCATTCCTGGAATAAAACCTACTTGGTCA
GGATGGATGATTGCTTTAATGTGATCTTGGATTCGGTTAGCGAGAATTTT
ATTGAGGATTTTTGCATCTTTATTCATAAGAGAAATTGGTCTGAAGTTCT
CTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCT
TCATAAAATGACCCGCCTAGAGTACTTTCGACTTCTATCTTGTGAAAAAG
TTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTG
CACTAAACCCGTCTGGTCCTGGGCTTTTTTTGGCTGGGAGACTATTTATA
ACTGCTTCTATTTCTTTAGGGGATATGGGACTGTTTAGAAGGTCAACTTG
ATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCATTT
CGTCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGTAGAAGGATCTG
ATGGTGTTTTGGATTTCTTCAG

Query= MSMg01no317_i10.b1 MSMg01no317_i10.b1 CHROMAT_FILE:
MSMg01no317_i10.b1 PHD_FILE: MSMg01no317_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:33 2005
         (685 letters)



>mm_chr11_39524192_39525276
          Length = 1085

 Score = 1278 bits (661), Expect = 0.0
 Identities = 676/681 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcttatatcctgttttatagtggtggcttctacttttacaggaaagcatctga 64
           ||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 205 gaattcttcttatattctgttttatagtggtggcttctactttcacaggaaggcatctga 264

                                                                       
Query: 65  gtcttttctcttataagcttctatggccatagcctgtccttttcttgtgaactaatttat 124
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtcttttctcatataagcttctatggccatagcctgtccttttcttgtgaactaatttat 324

                                                                       
Query: 125 cactggatcaggaaacctacagagtccgattgattgacaccctaattttctcaagattga 184
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 325 cactggatcaggaaacctacagagtccgattgactgacaccctaattttctcaagattga 384

                                                                       
Query: 185 aggataaagtacagggggaaatgaaacagctgcttacaagcttctttttaaacgcaccag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggataaagtacagggggaaatgaaacagctgcttacaagcttctttttaaacgcaccag 444

                                                                       
Query: 245 ctcctcacttgaccccacatggtaacgagcagtagatgagagcatgacatgctggccttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctcctcacttgaccccacatggtaacgagcagtagatgagagcatgacatgctggccttc 504

                                                                       
Query: 305 atcttgtatctgcctgtctcctttactttagataaaggcacactggaaagcccttgtcct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atcttgtatctgcctgtctcctttactttagataaaggcacactggaaagcccttgtcct 564

                                                                       
Query: 365 aagtcgactgtcacctgggattcctggaagagcaaagccgtacaggccagaaaaattttg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aagtcgactgtcacctgggattcctggaagagcaaagccgtacaggccagaaaaattttg 624

                                                                       
Query: 425 tcacatccatcaaggcaagactatatcttggaacataagtgatgctcctgcaggggccag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcacatccatcaaggcaagactatatcttggaacataagtgatgctcctgcaggggccag 684

                                                                       
Query: 485 aaaagtcaatagcagtatagattatttcagaattctttgtataactttgtataaccagat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaaagtcaatagcagtatagattatttcagaattctttgtataactttgtataaccagat 744

                                                                       
Query: 545 ctcagacaagtttcaaccagaccacaccctgaggagaggtgtttaatagtgtttacaatt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctcagacaagtttcaaccagaccacaccctgaggagaggtgtttaatagtgtttacaatt 804

                                                                       
Query: 605 tgcactagtttttgctctacgtattggtaaagctcagttatttatttttgcttccattta 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgcactagtttttgctctacgtattggtaaagctcagttatttatttttgcttccattta 864

                                
Query: 665 aaatttgtcttgtcctgtaac 685
           |||||||||||||||||||||
Sbjct: 865 aaatttgtcttgtcctgtaac 885


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)