XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTC
TATGATATCTTGCGACACCTACCTAGAAATTATTATGCAGAGATTTCTTT
AGCTAGTAAATTATAGTATCACATTAGGTGTTAATACGTTTCTAGAACTG
ATAGAATATCATTTAATTAAATGTATTACAATAATTACTGTTTATCAACA
CTTCACAGGTTACTAGTGACCATAACTGGTTGTCATAGGAAGAATTTTAT
GTCACTAATACATGTTTGTAATGTTAGCCATTTTTATGAAGATATGTTTT
GTTAAAAATTAGCCAACATAGTAAAAAAATGAAATCTACTGCAATATGTG
TTGTGGCTTCATATTAAAATAATGTTTTAAATACTAACAAATTTAAGCCG
TAAACATATAAAGGTTACCACCACACAACCAAGAGGGTATGTAGGAGAAA
TGCAATGCTCATAATTGGTATGGTATAAAACACCATAATAAAATTAAATA
ATTTCTTGATAATATCAGTAGATAGTAAAAAAATAAGAACATTTGACATT
AAACATTTTATTGTCTCAGAAAAATGAGAAAAATGGAAGCTTGCATGGTG
AAGGACATTTAAAATACAAAACACAATAGTATTAAACTTTATTGTGAGAG
AATGAATGCCTTCTATCAAAGACTAAAACATAGGATGCCCTCTCTCTACA
CTACAGCTCTTTTTGATCCAAAATGTCAT

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTAAAATTACTCCTTTAATCTGGGCCATACCT
TCTACTGGAGGCCTACATAAGGACAATGAAAAAAGAAAGTGGTTGTTCTT
TGTCAGCTTGCTTTTACTTACCAGCACATTTTTTAGAACTTACTTCTTCA
GGATTCTAGCTTATACAGGAGACCATCTGAGACACTCAGCTTCATGGAAC
TGTGCAATTACTAGTTTCTTTGATTACTTGGACTGTAGACTCTAAGTCAC
TCCAATAATTTTCCTTAATATATTGAAACATTCCGTAAGTTCTGTGACAC
TGGAGAATCCTGATCAGTACTATACCTCACCTGAGGTTATTGTTCATTTG
TTTGTCTCACAAATACCACCCCACTAGAGAAGACATTATAATGAGAAGAT
TAAATTAAATTCTTCAGAGATTCACTGTTTAAATCTTAAATTAATTTTGG
CAGGGATATGAGTAGAAGGAATGTTATTTTGGTGAACTCTGAAACAATGC
TTAAAGATGTTTAATCATCACACAATTAACACCCACCTTACTTTTGACTC
CATCTAAATAGTATCTTGCTGGAATTCAGCTCCATTTTCCACAAAAGACA
TTACATTATGATGTTCACATTGCCTTTGGCAGTGAGTCATTAGACACGAT
ATAATTTTGGTCAAATAAAGGTGAACCT

Query= MSMg01no318_a06.b1 MSMg01no318_a06.b1 CHROMAT_FILE:
MSMg01no318_a06.b1 PHD_FILE: MSMg01no318_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:06 2005
         (579 letters)



>mm_chr11_41770547_41771525
          Length = 979

 Score = 1002 bits (518), Expect = 0.0
 Identities = 560/574 (97%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctatgatatcttgcgacacctacctagaaattattatgcagagatttctttagct 65
           |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 206 gaattctatgatatcttgtgacacctacctagaaattatgatgcagagatttctttagct 265

                                                                       
Query: 66  agtaaattatagtatcacattaggtgttaatacgtttctagaactgatagaatatcattt 125
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 266 agtaaattatagtatcacattaggtgttaatacatttctagaactgatagaatatcattt 325

                                                                       
Query: 126 aattaaatgtattacaataattactgtttatcaacacttcacaggttactagtgaccata 185
           ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 326 aattaaatgtattgcaataattactgtttataaacacttcacaggttactagtgaccata 385

                                                                       
Query: 186 actggttgtcataggaagaattttatgtcactaatacatgtttgtaatgttagccatttt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 actggttgtcataggaagaattttatgtcactaatacatgtttgtaatgttagccatttt 445

                                                                       
Query: 246 tatgaagatatgttttgttaaaaattagccaacatagtaaaaaaatgaaatctactgcaa 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tatgaagatatgttttgttaaaaattagccaacatagtaaaaaaatgaaatctactgcaa 505

                                                                       
Query: 306 tatgtgttgtggcttcatattaaaataatgttttaaatactaacaaatttaagccgtaaa 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 506 tatgtgttgtggcttcatattaaaataatgttttaaatactaacaaatttaagccataaa 565

                                                                       
Query: 366 catataaaggttaccaccacacaaccaagagggtatgtaggagaaatgcaatgctcataa 425
           |||||||||||||  |  | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 566 catataaaggttaatattatagaaccaagagggtatgtaggagaaatgcaatgctcataa 625

                                                                       
Query: 426 ttggtatggtataaaacaccataataaaattaaataatttcttgataatatcagtagata 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ttggtatggtataaaacaccataataaaattaaataatttcttgataatatcagtagata 685

                                                                       
Query: 486 gtaaaaaaataagaacatttgacattaaacattttattgtctcagaaaaatgagaaaaat 545
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gtaaaaaaataagaacattccacattaaacattttattgtctcagaaaaatgagaaaaat 745

                                             
Query: 546 ggaagcttgcatggtgaaggacatttaaaataca 579
           ||||||||||||||||||||||||||||||||||
Sbjct: 746 ggaagcttgcatggtgaaggacatttaaaataca 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)