BAC Information

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BAC

Clone NameMSMg01-318J16
Chromosome11 (Build37)
Map Location 71,945,551 - 71,945,790
singlet/doubletsinglet
Overlap genePitpnm3
Upstream geneNlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik, Wscd1, Aipl1, 6720460F02Rik
Downstream gene4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1, Ankfy1, Cyb5d2, Zzef1, LOC627119, Atp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318J16.T7 (MSMg01no318_j16.b1)MSMg01-318J16.TJ (MSMg01no318_j16.g1)
ACCAG438359
length755737
length of high quality
(start - end)
---240 (79 - 318)
definitionCHROMAT_FILE: MSMg01no318_j16.b1 PHD_FILE: MSMg01no318_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:49 2005CHROMAT_FILE: MSMg01no318_j16.g1 PHD_FILE: MSMg01no318_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXX
AAAACGATGAAGTGGGAGGCCTGGNGAAGNCTGGATTCTTCACTGGNNGA
ANNATAGAATGATTCAGTAATTCGGGNTGGAGGAACAGTTTATGCCATTT
CCAGGTGTTGGCCTCTGCTCCCCAGAGGAGGAACTGGCTGAGGGGGACAG
AAAGCCTAGTCACCAACAGCAGTTAAAAACAACAACAACAGCAACAAAAA
AAACCCCAAAAACAAAAAACAAATGATCTGATGTGTGGGGGCTGGGCAGG
GGATTCATTTGCAGATCCTCAGGTTCAAAGCCTTGATTACCAAGGGGGCC
TAGGTGTGCGCTCAAGGTCTTATGTTATGGTAACAGCAGGCTTGAGTGCT
CTAGGAGGTAGTCCTGCTCCCTCTGGCAGGGACCAGGGATCTGTGACCCA
GGAAAGAATACAACCCCCCCCCCTCCCCACGGGACCAGGGCTGGGATTCT
CTGCACTTTGTAAAGATGCCAGAATAATTGAGGCACATGGAGAAACTCCC
AGGCCTAGGGTACCAGGATACTGTCCCTGAATATCTTGGGAAGGCCATCA
CCTCTGCAAGGGGACAGCAGACCCCCCTTTGCAATGCCAGACTCCAGGAC
TTCCTTCAACTCTGTCTCAAGGAAGCCCTCCTGGACTTGCTGAGGTCAGG
TAATACATAGTCTTACATTGTCTTGACTCACATGCTGAATTTTTGAGACC
CTTCCTCAATCTCTTGGTCTGGGACTCTGTATTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_j16.g1 MSMg01no318_j16.g1 CHROMAT_FILE:
MSMg01no318_j16.g1 PHD_FILE: MSMg01no318_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:49 2005
         (240 letters)



>mm_chr11_71945211_71945850
          Length = 640

 Score =  381 bits (197), Expect = e-110
 Identities = 230/243 (94%), Gaps = 6/243 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggaggaa-cagtttatgccatttccaggtgttggcctctgctccccagaggaggaactgg 59
           ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 580 ggaggaaccagtttatgccatttccaggtgttggcctctgctctccagaggaggaactgg 521

                                                                       
Query: 60  ctgagggggacagaaagcctagtcaccaacagcagttaaaaacaacaacaacagcaacaa 119
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  
Sbjct: 520 ctgagggggacagaaagcctagtcaccaacaacagttaaaaacaacaacaacagcaac-- 463

                                                                       
Query: 120 aaaaaa--ccccaaaaacaaaaaacaaatgatctgatgtgtgggggctgggcaggggatt 177
            |||||  |||| ||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 462 -aaaaacccccccaaaacaaaaaacaaacgatctgatgtgtgggggctgggcaggggact 404

                                                                       
Query: 178 catttgcagatcctcaggttcaaagccttgattaccaagggggcctaggtgtgcgctcaa 237
           |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 403 catttgcagatcctcaggtttaaagccttgattaccaagggggcctaggtgtgtgctcaa 344

              
Query: 238 ggt 240
           |||
Sbjct: 343 ggt 341


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)