Query= MSMg01no319_f12.b1 MSMg01no319_f12.b1 CHROMAT_FILE:
MSMg01no319_f12.b1 PHD_FILE: MSMg01no319_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:40 2005
(372 letters)
>mm_chr11_105720857_105721628
Length = 772
Score = 584 bits (302), Expect = e-171
Identities = 359/386 (93%), Gaps = 17/386 (4%)
Strand = Plus / Plus
Query: 4 ggaattcttcttattaccaaaaagaaacaaatactacattcaacagtgttagtctcagaa 63
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ggaattcttcttagtaataaaaagaaacaaatactacattcaacagtgttagtctcagag 246
Query: 64 gaaacaaatgtgtgtcgcctgtggtgatcgaatttaaacactggctggctgccctttgat 123
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 247 gaaacaaatgtgtgtagcctgtggtgatcgaatttaaacactggctagctgccctttgat 306
Query: 124 cactgacaggaaggatacctaagggaattttcttgaatgacagaaatgtttttcaatttg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cactgacaggaaggatacctaagggaattttcttgaatgacagaaatgtttttcaatttg 366
Query: 184 accaggtttttagttgcatgattatatatatatttaccaaaacttatcagagtatataat 243
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 accaggtttttagttgcgtgattatatatatatttaccaaaacttatcagagtatataat 426
Query: 244 tgaaa------tagcc---ttt----tt---ttaaaa-tcatatatacatatcctcaggt 286
||||| || | | | || |||||| ||||||||||||||||||||||
Sbjct: 427 tgaaaattatatatcagagtatataattgaattaaaaatcatatatacatatcctcaggt 486
Query: 287 agctagagttttcctcccaggggagttttacggaaaatacttttcaattcgtagtcagga 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 agctagagttttcctcccaggggagttttacggaaaatacttttcaattcgtagtcagga 546
Query: 347 attagattgttaataacgcacttctc 372
||||||||||||||||||||||||||
Sbjct: 547 attagattgttaataacgcacttctc 572
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space: 276969
Effective search space used: 276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no319_f12.g1 MSMg01no319_f12.g1 CHROMAT_FILE:
MSMg01no319_f12.g1 PHD_FILE: MSMg01no319_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:40 2005
(549 letters)
>mm_chr11_105788345_105789296
Length = 952
Score = 961 bits (497), Expect = 0.0
Identities = 537/557 (96%), Gaps = 13/557 (2%)
Strand = Plus / Minus
Query: 1 ccagaggaaaaggagaagtcacacctctcaacaagcacgaggcagggcagtatggccctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 ccagaggaaaaggagaagtcacacctctcaacaagcacgaggcagggcagtatggccctc 693
Query: 61 agagtaaaggcggtagcagaccccttcttgagaactgggcagcctgagggcagacaggta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 agagtaaaggcggtagcagaccccttcttgagaactgggcagcctgagggcagacaggta 633
Query: 121 gggtggatggggctgctgagcgctcagagcct---caagagatgggcacagaggcagcat 177
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 632 gggtgggtggggctgctgagcgctcagagcctcaacaagagatgggcacagaggcagcat 573
Query: 178 atcctgccacctggggagcctgttccattgtgtggcaaagattcagtgagcaactggttt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 atcctgccacctggggagcctgttccattgtgtggcaaagattcagtgagcaactggttt 513
Query: 238 tgtccaaggcatttctgcagtagaaaaataaccatctttaatcaaccacccaactgtgat 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tgtccaaggcatttctgcagtagaaaaataaccatctttaatcaaccacccaactgtgat 453
Query: 298 tcttctggagttataaaagccggaggctgagtgaactgagaggaacccccc-----ccaa 352
||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct: 452 tcttctggagttataaaagccggaggctgagtgaactgagaggaa-----cggtttctaa 398
Query: 353 cggggagaaagggagcgcaatgtaacctcgcaaacgtggtgtccagagtctgccttgcta 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 cggggagaaagggagcgcaatgtaacctcgcaaacgtggtgtccagagtctgccttgcta 338
Query: 413 caggggcatggctgcaggaagccccctcaggcttgtgttctcttcttcctgaacctctag 472
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 337 caggggcatggctgcaggaagccccctcaggcttgtgttcccttcttcctgaacctctag 278
Query: 473 tctgtggggcccccccgccagctgcactagcagcagctccacgaagccattctttgtaac 532
||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 277 tctgtagggcccccttgccagctgcactggcagcagctccacgaagccattctttgtaac 218
Query: 533 caggtaagtatgatgca 549
|||||||||||||||||
Sbjct: 217 caggtaagtatgatgca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 952
Length adjustment: 10
Effective length of query: 539
Effective length of database: 942
Effective search space: 507738
Effective search space used: 507738
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
