BAC Information

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BAC

Clone NameMSMg01-319I19
Chromosome11 (Build37)
Map Location 74,529,313 - 74,529,661
singlet/doubletsinglet
Overlap genePafah1b1
Upstream geneOlfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412, Garnl4, E130309D14Rik, 1300001I01Rik
Downstream geneMett10d, Mnt, Rutbc1, Tsr1, Srr, LOC100042478, Smg6, LOC100043429, LOC627835, Hic1, LOC668604, Ovca2, Dph1, Rtn4rl1, Rpa1, Smyd4, Serpinf1, LOC100043447, Serpinf2, Wdr81, LOC100042498, 2010305C02Rik, Prpf8, Rilp, Scarf1, Slc43a2, Pitpna, LOC654359, Pps, Myo1c, Crk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319I19.T7 (MSMg01no319_i19.b1)MSMg01-319I19.TJ (MSMg01no319_i19.g1)
ACCAG439043AG439044
length732750
length of high quality
(start - end)		371 (36 - 406)348 (67 - 414)
definitionCHROMAT_FILE: MSMg01no319_i19.b1 PHD_FILE: MSMg01no319_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:55 2005CHROMAT_FILE: MSMg01no319_i19.g1 PHD_FILE: MSMg01no319_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCTTA
CACAGTAACGCCTCTCCCTCTCTACATAGCCCTAGAACGCACTATGTAGT
CCAGGCTGGCTTTGAACTCACAGAGATCTGGCAGCCCCTAACTCCCCAGT
GCTGGGATTAAAGGTATAACCCACCATCCCCAGCTCACATTTGCTTTTAT
GTAATCAAGATTGATAAGTGTTTCTTTCTCCTCTTCCTCTTCTTTATCTT
TTGTGGAACTGGGGATTGAATCTAGAGCCTGGCATAGGTGCTCTACTATT
GAGCTGTAGTCCCAGGCCATTCTAATTTAAAATTTTTATTTTTATTAATT
TTTCATTAGCATTTATTTGGTGGTGGATTTGTTTGTTTTCTATTTGTTTT
GGNTNNTTTTTCCCCCCCCCCCNCCNTAATNCTCCCNCCCCTCCTTCCTT
TTCTCTCCTTTCCTCCTCCTTTTCCCCTTCTCTCTCTTTTTTTTTCCCCT
TCTCTCCTTCTTTCCCTCTCCTCCCTTCCCCCCCCCCCCTTTTTCTCTCT
TTTCCCTTTTCCTCTTTTTTCTTCTCTTTTTCCCTCTCTTTTTTTCTTCT
TTTTCCCTTTCTCTTTTTCTTTCTCCTTTCTCTCCCTCTTCTTCTCTCTT
CCTCTCTCTTTTCTTCCTCCTTTCCCCTCCCCTTCTCCTCTCTCCCCTTT
CCCCTTCTCTTCCTCTTCCTTTTTTCTTTTTT

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGACTTGTGTGAAATGTGATAAAAAAGACTAGGA
GTGTGACTCAGTATCAGACCAGGGTCATAGGCACAACCTGGCTCCATAGG
TAAGTGTAAGGAAGAGGCCTAATGTTCTTTGTAAATAGAACAAAAATATT
TAGAGGTAAGGTATGAGAGTCAGGTGGGGCTAGTTCTTCTATAGAAGGTT
AGTGTCTCAAAGAACAGGATCACATACTTTTACAGAATGCATTAACTAGA
TAAATTAAGGATACATTTTGTTAATTTGGTCTTACATTGACAAGAATTGG
CAGTTAACTCCGACTAGGAAATTTTTTGACAGTTTGCTGAAAATATTGAA
ACTTGGGAAATTTACCCACCACAAATATTTTAAGTGTTGGCTTAAAACCT
AGGGCCTTATATATGTGCTTTTAACACAGAGCTGTACTCCTCAGGACAAA
TATTTTAACTTTTGAAGTATTGTAAAAAGTCTTATGTTTGGAGTCATCAA
GGTGGCTCAGCTACTAAAGGCATTAGTGACCTGAAAGCCTAGTGACCTGA
GTTGGATCCCCAGAACCCATATACAAGGATAGAATCGTTCCACACTATTT
TCTGCAGGTGCACCAAGGCATATATATGGTCCCACATACACACATCATTC
TTTTTCTTTTTNCTTTTCTTTTTTTTGGNTTTTCGAGACAGGGTTTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_i19.g1 MSMg01no319_i19.g1 CHROMAT_FILE:
MSMg01no319_i19.g1 PHD_FILE: MSMg01no319_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:55 2005
         (348 letters)



>mm_chr11_74529113_74529861
          Length = 749

 Score =  652 bits (337), Expect = 0.0
 Identities = 346/349 (99%), Gaps = 1/349 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agacttgtgtgaaatgtga-taaaaaagactaggagtgtgactcagtatcagaccagggt 59
           ||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||
Sbjct: 549 agacttgtgtgaaatgtgattaaaaaagactaggagtgtgactcagtagcagagcagggt 490

                                                                       
Query: 60  cataggcacaacctggctccataggtaagtgtaaggaagaggcctaatgttctttgtaaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 cataggcacaacctggctccataggtaagtgtaaggaagaggcctaatgttctttgtaaa 430

                                                                       
Query: 120 tagaacaaaaatatttagaggtaaggtatgagagtcaggtggggctagttcttctataga 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tagaacaaaaatatttagaggtaaggtatgagagtcaggtggggctagttcttctataga 370

                                                                       
Query: 180 aggttagtgtctcaaagaacaggatcacatacttttacagaatgcattaactagataaat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aggttagtgtctcaaagaacaggatcacatacttttacagaatgcattaactagataaat 310

                                                                       
Query: 240 taaggatacattttgttaatttggtcttacattgacaagaattggcagttaactccgact 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 taaggatacattttgttaatttggtcttacattgacaagaattggcagttaactccgact 250

                                                            
Query: 300 aggaaattttttgacagtttgctgaaaatattgaaacttgggaaattta 348
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aggaaattttttgacagtttgctgaaaatattgaaacttgggaaattta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 749
Length adjustment: 9
Effective length of query: 339
Effective length of database: 740
Effective search space:   250860
Effective search space used:   250860
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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