BAC Information

Click to search

BAC

Clone NameMSMg01-319O17
Chromosome11 (Build37)
Map Location 118,014,693 - 118,014,881
singlet/doubletsinglet
Overlap genenone
Upstream geneSec14l1, Sept9, EG667423, Tnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1, Socs3, Pgs1, Dnahc17
Downstream genePscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik, D11Bwg0517e, Enpp7, Cbx2, Cbx8, Cbx4, Tbc1d16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319O17.T7 (MSMg01no319_o17.b1)MSMg01-319O17.TJ (MSMg01no319_o17.g1)
ACCAG439298AG439299
length725749
length of high quality
(start - end)
189 (128 - 316)191 (124 - 314)
definitionCHROMAT_FILE: MSMg01no319_o17.b1 PHD_FILE: MSMg01no319_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:19 2005CHROMAT_FILE: MSMg01no319_o17.g1 PHD_FILE: MSMg01no319_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGCACTCCGCGGAATTCC
AGGTCACTCCCCAAGAATCTGAAAACCTCCTGGGCACAAGCAATGTCCAT
GTCTTTAGGATATTACTACAGAACAAAGCAGGGCACACTTGTAGGCCAAG
TGGTAAATTTAGTGCATGACAAAGCCTGCGTAAGAGCAGGATGGGAAGTA
AGGGCCTGGGGGCCCTGAGGAGACTCAAGACCCTAGACTCCTCACAGCTA
GGGGCAGAACTCATCTGCTTCAAAACTGATGCTGTGCCCCACTGAGTTCC
TTTTGGAGTTCAAGGACTTTTCAGTGGCCAATGGTCATTTCAACAGCCTG
GCTGCATATTGTTATGAATTCCACTCCCTTGTATTTTTATGCTTGGTATT
TATTTATTTTTGCCCCACTACCTTTTAAGATGAATTCCACACAGTACATG
ACATGACCAGATTTGACTCATAGACCAGTAGGAACTGGCTGGCAATACCC
TTAGCTCATGCTTTGCCCCCACAAAGCTCTCAGCCATGGAAAATTAAACT
GATTATGTACAGGCCCAAGGCACACATCTTGAGGGTGAGATGGGCGGAGT
TAGGTCAAATGTGTGTTGGACTGCAGTCTGTTGAGAACACCATGAATGGT
CCTCTGCTCCAGGTCACACTGGGTCCATTTAATGCTATCTATAGGTGAGA
TACAGACAGGTACACTTATAGCCTT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCAGAGATAACAGGCTAGTAAAAGTTACCTAGTGTTTTCTCTC
TCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCCCTCCTCCCTTTCTCTCTACACATACACACCCACACCCAC
ACACACACACACACACACACACACACAGTCGTGGTGGATTTATGAACATG
TCGTCAGGGCTCAATAGAACATGTGTTGGTGACCCAGGGGACAGACAGGA
GCCCCTCCGGAGGGAGATTCATGACTCTTTTGCCACAGCTGTTATCCGTG
GAGTATTCTGAATCTTCCAGTCGCCTTTAGGCATGGACATCACCGAGAGG
TTCTAGCGGGCCCCCCCCCAGAGAGGAAAGAAGAAGGACAGCCCAGCCTC
TGCTGGTGTTCCTGGGCAGTTGTTACTGACAAATGCAAAAATGGACCGAC
ATCTTTGGGTCATTACGAGAGAGCTCGACGCCCACCTAGGGGATTATCAT
CCCCTTTCGCTGGGTATAATGGGAGTGTTTTGGGGGGCGCTCTGGAGGGG
GGAAGAGATAAGCGGGAGGGGGCCCTAGAGAGAAGAAACGGGGGGGAGGG
GGTTATTTTTGTGTGGGGGAGGGGAAGGATAAAGAAGAGTGGTATAGGAG
GAATAGCGGGTTACTGTTCGGCATAGGGGTACATAATTTTACACGTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_o17.b1 MSMg01no319_o17.b1 CHROMAT_FILE:
MSMg01no319_o17.b1 PHD_FILE: MSMg01no319_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:19 2005
         (189 letters)



>mm_chr11_118014493_118015081
          Length = 589

 Score =  366 bits (189), Expect = e-106
 Identities = 189/189 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcagggcacacttgtaggccaagtggtaaatttagtgcatgacaaagcctgcgtaagagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcagggcacacttgtaggccaagtggtaaatttagtgcatgacaaagcctgcgtaagagc 260

                                                                       
Query: 61  aggatgggaagtaagggcctgggggccctgaggagactcaagaccctagactcctcacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggatgggaagtaagggcctgggggccctgaggagactcaagaccctagactcctcacag 320

                                                                       
Query: 121 ctaggggcagaactcatctgcttcaaaactgatgctgtgccccactgagttccttttgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaggggcagaactcatctgcttcaaaactgatgctgtgccccactgagttccttttgga 380

                    
Query: 181 gttcaagga 189
           |||||||||
Sbjct: 381 gttcaagga 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)