BAC Information

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BAC

Clone NameMSMg01-320L17
Chromosome11 (Build37)
Map Location 64,967,958 - 64,968,190
singlet/doubletsinglet
Overlap geneAU040829, 1700086D15Rik
Upstream geneEG544785, Hs3st3a1, LOC626959, Elac2
Downstream geneLOC100041790, Myocd, Map2k4, Zkscan6, Dnahc9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320L17.T7 (MSMg01no320_l17.b1)MSMg01-320L17.TJ (MSMg01no320_l17.g1)
ACCAG439891AG439892
length729816
length of high quality
(start - end)
234 (123 - 356)241 (62 - 302)
definitionCHROMAT_FILE: MSMg01no320_l17.b1 PHD_FILE: MSMg01no320_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:18 2005CHROMAT_FILE: MSMg01no320_l17.g1 PHD_FILE: MSMg01no320_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACA
TTATGGCCAAGTTACTCAAGGGGAAAAATTAGATGCCACTAGAAGTCCAA
TTCATATGCTTAGTCCAATAACTTGTTTTGAACATCAAAAATGAATCTTT
TTCTAAAAAATACGTTACTCAAAGTGATTGGAAAACACAACTAGTCCCAG
GGCCACTAAAGAAAGTGGAAATCTGTCAAAGAATCATCGTATCAGAAGAT
TGTCCTTGGAAAACTGCTCCCTGCTTTTATGACTCCATACAAAAGAAAAG
CTGGACACTTCGTTTTTACACTATTACAAAATGGGAGAGATGTAGCAAGG
TTGTCTTTTTTTTACACCCCCACCCTCCAACCGAAGTATATAGAAATATT
CAACATCCCACTGTCAAGTAGAACAAGGGTTCAATACTGGAGACTCGACT
GAAGATTGGGAGTGCACATGCATGTCTCACACACAAACACACACACACAG
GATGGGAGTCTCTCATTGATTTAATTTGATGATAACAAGTAAAATATAAC
TTCAATATAAAAAAATCTCAAAGTAAAATAATGTAATCTGATTTTTTTTT
AACTATCTCAAGGGCTGGTGAGATGGCTCAGCAGGTTATGGCCCTTGCCA
CCAAGCCTGACCACCTGAGTTTGATGCCTAAAATCCACATGCTGGAAGGG
GAGAACTGATTCCCCCAAGTTGTGTTCTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXGGTTCTCACTAGGAGCTGTCCTGAGAAGCCTGTTGGTTT
AGTGCTGTGGTTCTCAACCTTCCTAATGCTGTGACCCTTTAATACAGTTC
TGGATGTTGTGGTGACCCCCCTTCCCCCATCTATAAAGTTATTTTTGTTG
CTACTTCATAACTGTAATTTTGCTACTATTAGGAATCATGATGTAAATAA
CTGTGGGGTTTTTATGTTTGGTTGGTTGGTTTGTTTTTGGTTTTTGGTTT
TTTTTTTGTATCATTTAAACCTAAAACAGCATACAATTTAAGATAACTTC
CAAAAACAAAACCCCTTTTAATTTTTATTATTGTTTTGGTTGGTGTTTTT
CTCTTCAAAAAAAAAAAAAAAAAAAATGTTGGGGGGGGGGGCGGCTATTA
TTTTTATCTATTCCGTCGCTTTTTCATTTCTTATTTCCTTAATTTTTTTA
TTCTTTCATTTCTTTATCTCTACATTATTATCTTTTTATCTTTTATACTT
TTTATCCTCTTTGTTTTCTTTTCATCCCCCCTCTTTTTCTTCTCTTTTTA
CTTATTTTTTCTTTCTTCTATTTTCTCCTTCTTCTTTATTTTTTTCTCTC
CTAACCCCTTTTTCATATATTAATCCTCCGCCACATTTCTATCATTTACC
CCGCCCGTTTCTCTCTTATTTTTTTATACATTATCTATCTTATTTCTAGT
CTTATGTTTATTTAATGTTAAATTAATAAGTCCTCCACTTTCTCCTTCAA
ATAATACACCATTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_l17.b1 MSMg01no320_l17.b1 CHROMAT_FILE:
MSMg01no320_l17.b1 PHD_FILE: MSMg01no320_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:18 2005
         (234 letters)



>mm_chr11_64967758_64968391
          Length = 634

 Score =  451 bits (233), Expect = e-131
 Identities = 233/233 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgttttgaacatcaaaaatgaatctttttctaaaaaatacgttactcaaagtgattgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgttttgaacatcaaaaatgaatctttttctaaaaaatacgttactcaaagtgattgga 260

                                                                       
Query: 61  aaacacaactagtcccagggccactaaagaaagtggaaatctgtcaaagaatcatcgtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacacaactagtcccagggccactaaagaaagtggaaatctgtcaaagaatcatcgtat 320

                                                                       
Query: 121 cagaagattgtccttggaaaactgctccctgcttttatgactccatacaaaagaaaagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaagattgtccttggaaaactgctccctgcttttatgactccatacaaaagaaaagct 380

                                                                
Query: 181 ggacacttcgtttttacactattacaaaatgggagagatgtagcaaggttgtc 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggacacttcgtttttacactattacaaaatgggagagatgtagcaaggttgtc 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)