BAC Information

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BAC

Clone NameMSMg01-320L22
Chromosome11 (Build37)
Map Location 120,822,382 - 120,822,570
singlet/doubletsinglet
Overlap genenone
Upstream geneBaiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3
Downstream geneCsnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl, Ptchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320L22.T7 (MSMg01no320_l22.b1)MSMg01-320L22.TJ (MSMg01no320_l22.g1)
ACCAG439901AG439902
length742798
length of high quality
(start - end)		189 (130 - 318)---
definitionCHROMAT_FILE: MSMg01no320_l22.b1 PHD_FILE: MSMg01no320_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:19 2005CHROMAT_FILE: MSMg01no320_l22.g1 PHD_FILE: MSMg01no320_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGCTATTTTCCAACTTGGAATGTTTAAGGTATAGGGGTAGAAAAGGC
TGAAGAATAACTTGTTAGAGCAAAAAAAAGGTAAGTGGCGGGGTTAAGAG
CAGCAGGAGAGTGGGGATTACTCTACCATGTTCAACTGGTCAAGCTCATC
AGGCTGTGGGACACATTAGGAATTCCCAAGAAGACAGATTTCCAAACAGG
AACAGACCTAGTTCTAGCAGCCTGACAAGATTTTCCATGCCTCCCAGTCT
GGTGCTGCTGTGGAAGTCATTTCTACACAGATGCCAGTAGATCTGTGGAT
GTAGAATTCTTCTTTTTTTCCACCCCCCCGCCCGAGCTAAGGCAGTTGGA
CATACCCACTTCAGAGCTTCCCTTCCAGAAAAGGTGAAAATCTGAGGCAC
TAACACAGAGGCCTGCCTAGGTTAGGTACTTAGGAGGGCTCACAGAACTG
TCACAACATCACTAAGGGAACTCACATCTACTCATGACACCAGAGTCCAA
GCAGAAATCATCTTTCTGGCACCTACTCCACTAGCTTCCCAATACCCACA
AATGGACAAGCAGGAATGTCATCCTGAAAAAGTTGACTCTGTTGGGTTTG
TAAAACCAACACACAGAAGGCTGATGCAAAAGGATTGCTCAGTTCTAGGC
CAGCCTAAGCTATAGAAACTATCAACCTCAGAACCCCAACCC

TGGGGGGGGGGNNNNAACNNAAAACAGGAAGAGCNNNNNNNNNNCAAACG
AAGAAGGGAGTAGCCTGGCGGACGCCTGGATACAAAAGAGAGGNNGAANA
NAGAAGGATCCCAAAAAAGAGGNNANAGAGAAGGAGAAAANNANGGGGGG
NANNNAATTTTTCCCCCAGAGAAAGGGGGGAANANNANNNAAGNAGAAAA
AGAAGNAAGNNAANAAAAAAAANAAGGAAGGAGNAGANNANANAGNAAAN
NAANAAAAGAANAAAAAGGNAAGGAGGGGGGNGANANAGAANNANAATCN
GGAAANGGNGGAAGNNGAAGGGAGGAGGANNAGANGNNAAGGANANNNAN
ANNNCNCNANTGTTTTATTCAAGNANGNANNAGANAAGAANNGGNGGGGT
TATTGAATAATGTCCCCCCCCCCCCCTCTAGNNNTTANNNGAAANGAAGG
NNGGNGGNGAGGGAAAAAANNGGGAGNNNAAAAAGGGGNNGGGGGAGGGA
GNANAAAAGGGGGGGGAANNANNNNGNAANAGGGAAGAANNAGGAAGAAA
GAGAGAGAGAGAGAGAAAGAGAAAGAGANANAGAAANAAAGAAAGAGGAA
AGAAAGNAAGGGAAGAAAAAGGAGAAAAAAAGGGAAGGGGAGGAGGAAAA
ANGGAGAANGAAAGAGGGAAANGAAGAGGGGGAAGGAGAGAANGGAANAG
GAGAGAGTGTGGAGGAATATGGAGAAGAAGGGGAAAAAAAAAGGAAAAAG
AGGAGAAGAGAAGGGTAAAAAAGGGAAAGGAGGGAGAAGAAGAAAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_l22.b1 MSMg01no320_l22.b1 CHROMAT_FILE:
MSMg01no320_l22.b1 PHD_FILE: MSMg01no320_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:19 2005
         (189 letters)



>mm_chr11_120822182_120822770
          Length = 589

 Score =  366 bits (189), Expect = e-106
 Identities = 189/189 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtaagtggcggggttaagagcagcaggagagtggggattactctaccatgttcaactgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtaagtggcggggttaagagcagcaggagagtggggattactctaccatgttcaactgg 260

                                                                       
Query: 61  tcaagctcatcaggctgtgggacacattaggaattcccaagaagacagatttccaaacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaagctcatcaggctgtgggacacattaggaattcccaagaagacagatttccaaacag 320

                                                                       
Query: 121 gaacagacctagttctagcagcctgacaagattttccatgcctcccagtctggtgctgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacagacctagttctagcagcctgacaagattttccatgcctcccagtctggtgctgct 380

                    
Query: 181 gtggaagtc 189
           |||||||||
Sbjct: 381 gtggaagtc 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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