BAC Information

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BAC

Clone NameMSMg01-321I02
Chromosome11 (Build37)
Map Location 76,721,435 - 76,721,821
singlet/doubletsinglet
Overlap geneTmigd1
Upstream geneRph3al, 1700016K19Rik, 1500005K14Rik, Vps53, LOC668634, 2310047D13Rik, Gemin4, Dbil5, Glod4, Rnmtl1, Nxn, Timm22, Abr, LOC100043483, A830053O21Rik, Tusc5, Gosr1, Cpd
Downstream geneBlmh, Slc6a4, Ccdc55, Efcab5, LOC628108, Ssh2, LOC544800, Coro6, Ankrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1, LOC668641, Nufip2, Cryba1, LOC100043506, Myo18a, Pipox
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321I02.T7 (MSMg01no321_i02.b1)MSMg01-321I02.TJ (MSMg01no321_i02.g1)
ACCAG440456AG440457
length735760
length of high quality
(start - end)
329 (37 - 365)330 (86 - 415)
definitionCHROMAT_FILE: MSMg01no321_i02.b1 PHD_FILE: MSMg01no321_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:16 2005CHROMAT_FILE: MSMg01no321_i02.g1 PHD_FILE: MSMg01no321_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCG
CGGAATTCAAATAGGTTACGGAATTTTCCCATTACTAGGCCTTGCAGCTC
ATAAATAAATGGCAAGACCACGGCTCACACACAGCAGACGGATTAGATGG
TTCCGACCGTAAGTCACCAGCTATCCAGCCTGGCAGCCTGAGCTCAGTGT
CTGGGTGGAGGGAGAGAACTGACTCTCAGTTTGTCCTCTGACTTCCACTT
GTATGTCGTGGACCCTGTGTGGACACACACACACACACACACACACACAC
ACACACACACACACACAAGCAAATATATGTTATAATAAGATTTGAGCACA
GGTCTATCAAATTCTATATTTTACATTCTCCCCCCCCCCTTTTTTCTTGC
TTTATTTTGATAATAGACCCCCCCCATGTTAGAGAAATAGAGAGGACGAG
ACCGCTCATTTTGCTGAAGAAATACCCAGGCAGGAATAGGCATTTGGACA
GCTTTCAAAGCTGGTTTAGATTTGAATAAAAAAAAAAGTGGAGATCATTT
CAGATGAGAGAGAACAATGAACATAAAGTAGAATGCATTTTTATGGAGTG
ATAAGTTTAGAGAAGAGAATGTGTAGAACAAAGAAATGTGGCAGTGAGGC
TGTAACAGGTTGAGCCCAGATTGTGGAATATCTTGCACTGTTTGTATGAA
ATGTCAATTTTACATACGGAAGTAGGTTTTTGAGN
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAGAGCAGCA
AAATGTCACTCTTCTGAGAAAGTTATAAATAACACAGCCTACGCAGGGTC
TAAATATTTCAGTATGCAGATGATACAAGCCTCGTTTCCCTTCTTCTTCC
GGCCTACCTCCTTTTTTTTGGGGGGGGGGGGGCGTCAGATCTTGTTACAG
ATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCGGACCTTTG
GAAGAGCAGTCGGGTGCTCTTACCCATTGATCCATCTCACCAGCCCCTAC
CTCCTTCCTTAACTGCCCACTCTTTAACCATTTTATTAATTTCCTGAGCC
TCTTCCAATAAATACTTGGGACCCACACAAGAATAGAAACCTGGCTTGGT
CATTTTTCCTTCTAGATGTGAGAAGGGCTTGGTGGATGGCGAGGGTTGGA
ATTGTTTGGTGACGGATGTCCTTTATAATATTTTCCGTTAAACAGTTTTA
CCGTGCGCCAGTTTTTTTTTCCATATATACATTTTTTCAGTTCCCGTTTT
TTCCGTCCCTTTTTTCCCCCCCTTTTTTCCTTCCCCTTATCCCCCTTTTA
TGTTTTTTTTCCATTCCTTTTTTTTTTTGCCCTCCCTCCTCTTTTTTCAC
CCAGTTTTTTTCTTTCGTTTTCGCCTGTCATTTTCCTTTTTTCTTCTCGT
TACCACCGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_i02.g1 MSMg01no321_i02.g1 CHROMAT_FILE:
MSMg01no321_i02.g1 PHD_FILE: MSMg01no321_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:16 2005
         (330 letters)



>mm_chr11_76721235_76721963
          Length = 729

 Score =  433 bits (224), Expect = e-126
 Identities = 323/388 (83%), Gaps = 59/388 (15%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccaaagagcagcaaaatgtcactcttctgagaaagttataaataacacagcctacgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttccaaagagcagcaaaatgtcactcttctgagaaagttataaataacacagcctacgca 260

                                                                       
Query: 61  gggtctaaatatttcagtatgcagatgatacaagcctcgtttcccttcttcttccggcct 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 gggtctaaata-ttcagtatgcagatgatacaagcctcgtttcccttcttcttccggtct 319

                                                                       
Query: 121 acctcc-------tttttttt---g-------------------g---g------g--g- 139
           ||||||       ||||||||   |                   |   |      |  | 
Sbjct: 320 acctcctttattattttttttaaagatttatttatttattatatgtaagtacactgtagc 379

                                                                       
Query: 140 -g------g--------g--gggggcgtcagatcttgttacagatggttgtgagccacca 182
            |      |        |  | ||||||||||||| ||||||||||||||||||||||||
Sbjct: 380 tgtcttcagacactccagaagagggcgtcagatctcgttacagatggttgtgagccacca 439

                                                                       
Query: 183 tgtggttgctgggatttgaactccggacctttggaagagcagtcgggtgctcttacccat 242
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| 
Sbjct: 440 tgtggttgctgggatttgaacttcggacctttggaagagcagtcgggtgctcttacccac 499

                                                                       
Query: 243 tgatccatctcaccagcccctacctccttccttaactgcccactctttaaccattttatt 302
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgagccatctcaccagcccctacctccttccttaactgcccactctttaaccattttatt 559

                                       
Query: 303 aatttcctgagcctcttccaataaatac 330
           ||||||||||||||||||||||||||||
Sbjct: 560 aatttcctgagcctcttccaataaatac 587


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 729
Length adjustment: 9
Effective length of query: 321
Effective length of database: 720
Effective search space:   231120
Effective search space used:   231120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)