BAC Information

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BAC

Clone NameMSMg01-322B13
Chromosome11 (Build37)
Map Location 63,508,204 - 63,508,488
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b, Cdrt4, Tekt3, Pmp22, LOC433423, LOC100042799
Downstream geneLOC100041690, LOC654442, LOC668297, Hs3st3b1, Cox10, 2810001G20Rik, EG544785, Hs3st3a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322B13.T7 (MSMg01no322_b13.b1)MSMg01-322B13.TJ (MSMg01no322_b13.g1)
ACCAG440886
length742739
length of high quality
(start - end)
---287 (73 - 359)
definitionCHROMAT_FILE: MSMg01no322_b13.b1 PHD_FILE: MSMg01no322_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:59 2005CHROMAT_FILE: MSMg01no322_b13.g1 PHD_FILE: MSMg01no322_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATCACCTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTAAAACACGGCATCAT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTCTTCCTCCCGGATGTCCCACCTTCT
ATTCTATTTTTTCTATAGCCCATAGGCTTTTGAATTGACAGGTGATGCAT
CCATAAAATACATAAGATATTCTTCCTACTACCAGAGGTGTGTCTTTGAC
AGTTATATGGTCTCTAATGCCAATATAGAGCATCCTGCTTCCTGTTTAGC
TGCATGATGTAAGTAGCTACCTCTTGTTCCTGCCAACATGGCCTAGCTGC
TCTGGGTGACAAGCTTTTCATGCCAGGCTGAACCAAAGTCCCGTGAAACT
GTGAGTCTTTATAAACCGCCCCTTCTTGTGACTTCATCACAGTCAGTAGA
TCAGTAACTCCCACCTACCTGTTAATAAATATGGAAGTCTTAGAATATAC
AAAGTGTGCCCTTCAACTACCTTGGAATCCAACTGATAATAAAAGCAGAG
AGATATCAGGAAGAATGCCAGCCATTTAGATAATGAGCCACTGACTCCAA
AATAACCAAAGGATTTTTCAAAGCAAACAGAAGGAAGTATATAATACCAG
ATAATGAAAGCATACTTGGCAAAGTGAAGAAGGTATCCGAGGGATAGTTT
CAGAGCATTTATCATTCTAACTGCTTGGGTTAGGCAGTACTACTCCAAAC
TGAGTTTCTTAGTCTCTACTAACGATAAGGAGTAAATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_b13.g1 MSMg01no322_b13.g1 CHROMAT_FILE:
MSMg01no322_b13.g1 PHD_FILE: MSMg01no322_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:59 2005
         (287 letters)



>mm_chr11_63507897_63508583
          Length = 687

 Score =  489 bits (253), Expect = e-143
 Identities = 277/285 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcttcctcccggatgtcccaccttctattctattttttctatagcccataggcttttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 592 attcttcctcccggatgtcccaccttctattctattttttctataggtcataggcttttg 533

                                                                       
Query: 61  aattgacaggtgatgcatccataaaatacataagatattcttcctactaccagaggtgtg 120
           ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 532 aattgacaggtgatgcatccatacaatacataagatattcttcttactaccagaggtgtg 473

                                                                       
Query: 121 tctttgacagttatatggtctctaatgccaatatagagcatcctgcttcctgtttagctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tctttgacagttatatggtctctaatgccaatatagagcatcctgcttcctgtttagctg 413

                                                                       
Query: 181 catgatgtaagtagctacctcttgttcctgccaacatggcctagctgctctgggtgacaa 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 catgatgtaagcagctacctcttgttcctgccaacatggcctagctgctctgggtgacaa 353

                                                        
Query: 241 gcttttcatgccaggctgaaccaaagtcccgtgaaactgtgagtc 285
           || || |||||||||||| ||||||||||||||||||||||||||
Sbjct: 352 gcattccatgccaggctggaccaaagtcccgtgaaactgtgagtc 308


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)