Query= MSMg01no322_g17.b1 MSMg01no322_g17.b1 CHROMAT_FILE:
MSMg01no322_g17.b1 PHD_FILE: MSMg01no322_g17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:22 2005
(249 letters)
>mm_chr11_96485253_96485901
Length = 649
Score = 431 bits (223), Expect = e-125
Identities = 245/263 (93%), Gaps = 17/263 (6%)
Strand = Plus / Minus
Query: 1 ctgcatggttgacaaaattagaagaaaaaaaaaggagaaaaaaaaaaagcgaagagaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ctgcatggttgacaaaattagaagaaaaaaaaaggagaaaaaaaaaaagcgaagagaagg 378
Query: 61 gttaagctgactgactgttttccagaaagctaaaagtaagatttcagtatttgttgtgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gttaagctgactgactgttttccagaaagctaaaagtaagatttcagtatttgttgtgaa 318
Query: 121 tgagaagctccgagaccaacagcacagaacacttcaatttaaaactagtaagttagcg-- 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tgagaagctccgagaccaacagcacagaacacttcaatttaaaactagtaagttagcgtt 258
Query: 179 ---------------tttttttttttttttttttttaaacaaagccattaggacatttcc 223
||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 257 tttttttttttttttttttttttttttttttttttttaacaaagccattaggacatttcc 198
Query: 224 tgtttgaatgtaaattggagagg 246
|||||||||||||||||||||||
Sbjct: 197 tgtttgaatgtaaattggagagg 175
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no322_g17.g1 MSMg01no322_g17.g1 CHROMAT_FILE:
MSMg01no322_g17.g1 PHD_FILE: MSMg01no322_g17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:22 2005
(343 letters)
>mm_chr11_96305977_96306719
Length = 743
Score = 629 bits (325), Expect = 0.0
Identities = 337/341 (98%)
Strand = Plus / Plus
Query: 1 tcagcttgaagggacctctgagaacgtgtgctttaacactctaattttctggaactggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagcttgaagggacctctgagaacgtgtgctttaacactctaattttctggaactggaa 260
Query: 61 accggggcccagataagtgattaggttgatgtcatgtactaagttaatggtggcattggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accggggcccagataagtgattaggttgatgtcatgtactaagttaatggtggcattggg 320
Query: 121 acaatactgctggatcctgattcccggtttagggctgttataacttcaaacgggaggcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaatactgctggatcctgattcccggtttagggctgttataacttcaaacgggaggcta 380
Query: 181 cacgtacactgctagaatattatggatttgtatttctgagaacacacttcaactataaat 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacttacactgctagaatattatggatttgtatttctgagaacacacttcaactataaat 440
Query: 241 agtttctctttctcccgacataaatctctttctttccctcccatcattagatgagaattg 300
||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 agtttctctttctcctgtcataaatctctttctttccttcccatcattagatgagaattg 500
Query: 301 ttattagaatccagggccgctattttattagctgtagcttt 341
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttattagaatccagggccgctattttattagctgtagcttt 541
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space: 245156
Effective search space used: 245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
