BAC Information

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BAC

Clone NameMSMg01-323H11
Chromosome11 (Build37)
Map Location 67,094,220 - 67,094,762
singlet/doubletsinglet
Overlap geneMyh8
Upstream geneGm879, LOC668323, A530088H08Rik, 9130409J20Rik, A730055C05Rik, 2310004I24Rik, Sco1, Myh3, Myh2, Myh1, Myh4
Downstream geneMyh13, Gas7, Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16, Stx8, Ntn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323H11.T7 (MSMg01no323_h11.b1)MSMg01-323H11.TJ (MSMg01no323_h11.g1)
ACCAG441880AG441881
length1,2981,344
length of high quality
(start - end)
---541 (141 - 681)
definitionCHROMAT_FILE: MSMg01no323_h11.b1 PHD_FILE: MSMg01no323_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:02 2005CHROMAT_FILE: MSMg01no323_h11.g1 PHD_FILE: MSMg01no323_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCAATTCNNNNNNNNGGCACTGGGCGCTATAGACTCCTATAGGGAGAG
GATCCGCGGAATTCTCAAGGACATAGTCTCCCCTTTACTTGCCGCAAACT
CTTGGCGGTACTCCTAAGTTATCCCTCGGTTACCGAAACCCTGACCAGCT
TCATAAAAATAGGCCGCAGAAATGGAAGGTACATCACAGGTTGCCGGGCT
CTGGGGACCGGAATGGAGATAGACTGCTTATGGATTACAGGCGCGATGAG
ATGTTCTTAAATTAGATAGAAGTGATGATTGCCCAGCATTACCAACGTAC
CTACCCACTGGATTATTAAGCACTAATTTTATTGGATTTCAATTACATCT
TAGATTAGAGAAAATCATTGAACAATGATTTACTGACTACTTTGGTCACT
TATGGTCCATCTTACCTCCATGAAACTTCTTCAGGAGCATTGAGAGTCGG
AGGAATTAAAATAGAGGCTAGAGTCTAAAGCTCATGTTGGGCCGTCTGAG
GCATGACCAGCTTTAAGTAGTGAGAGATTGCACAGAGCTTCCTTGAGAGA
AAGAGAACCTTACCTGCTTCTGCTCCTGCCTACATGGAAAAGAGGAATGA
CAACATCTTCTGGAAGAACTTCTGGAACAGTCCCTACACGGTCTCATTCA
GCGGGTCCTTGATCTTATCCAGACAGCCATTGATGTTATAATCCCCAGTG
CCCGCATAGTGTCTCAGGGAGAAGTGGACTACGGCCTTGCCTTTGGCATG
TTTAGGCTTCTGCATCTTGCNGAACGATCTCAGTTGATGTTCNNCCGCCT
TGTTCTTGAATGATGTATCTGCGAGCTTGGCGAACATGCACTCCTCTTCT
CCGCAGTACAAGATGACCGCTGGCCTATACGATGATGACATCGATGAAAT
CTTTACGTTTGACATGCTCGATACTGTTTCCAAGGAGGGACTACACAAAT
AGAAAACTTTTGCGACCACTCTGGGGTGGTGGAAGAATCGAACTGTCACC
CTGAAAGGAACGTCCCGGCTATTAGCACTACTCCGACATGGTCCACCCCA
AAACCGGGTTCTATTGCCTAAATTAACTAGGACTCGAACCCTTTGGTCCT
TTTCCCGGGCCCTTGGAATCAAGGGAGGGATCCCCGGCCCCGTTTTTTTA
CTCTTTTTACCCTTTATCTTTCTCCTTTTTCTTAAACTCTCGCAAAAAAA
AAAGGCCCCGGCCCTCCCTTTCTTTTTTGGGGGTGAATCCTCATTTCCCT
CAATAAGGGCGAAACCCCTCCTCAGGTCATATTTTTCCCCTCCCCCCT
NNCCGAACTNNNNNNNTTGAGGTGAGGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTAAGTGCCTTTTCAATGA
CACTGCCGATGTTGCCACCTTTGAAGACCGACCAAGAGTAAGCTGGAGAT
AGAGCATGGATAAAGAGAACTTATAAAATTCCTCTCATGGACTTTGAAAC
ATTCTCCTATTCAAATCTGCTAGTTCTGCATTATCAAAGCACACTCATGA
TCGGTCCCAGAACAGCACTAAAACCTTTTATCTTCACATATAAATGCCTC
TGGATATGTTCTCAGTTCCCATGTTCCCTTTCTTCTGTGGAGTTTTGGTA
CCTGGGCACATTTCTTTTTTGTTTTCTGTTCATTTTGTTGTTCTTGCTCA
TAGATTGTCTTTTATAGGGGGTGGGGATAGGGAAAGTGACACACCAGGGA
CCCCCCCACTATGACAGACTGGCCTGGACTTTCACAAGGACTCTGTGCCC
TCCTTCCTCAGAGTTACCCCGGTGTTGGCTTCCGCCAGAGGTTATAGTAT
CCAGAAACTGCCATATCCACCGCCACCGAATGACTCTCCAGGCTTTGGAG
CTACCCCAAATTTAAAGTCGCCTGGGCTCCCAATCACACTTTTCATACAA
ATCTGTTCAGAACCATGGCATCGATCTGCTTAGTGTTATCCCAATATTGG
CTGAAGCGCTGAGCCATTGCTTTCCTGTCTGTTCTCCTAGATGCACTACA
GTTGTACATGATTTTATTAGAAAAAGAAGACAATCTCATATATCCAAAAT
CCGTACCCATTTCCTTGAACAGAAGCTCAGGGTTTTTAAAGTCTAAGTGT
GTTCATACATCTAAATAACATGTAGATTTGTGATGACTATCTCCAGAAAT
ACTTTTAATTTTACAAGTTTCTAAATCTCCTTCTATCAAATCAGAATTGG
TAAAGTGAAAAACTAGGAATTTTGGAAAAATACTTTTGTACTGAAAGAAA
AGTCCCTATTTTAAGGAAAAATAAAATTTAATCTATTAGTTAATTGGTTT
CTTAAACCGCGAATTGAATCAAATAAGCCCCTTCTTATTTTGGCCCCCCA
GTCTTTCATTTATGGGCCTGGAAAAACTGGAAAGGAACACAGAATTTGAA
TATAAGGAAAAGTGCGAGTGAAAAACCCGTATGGTTTCTCCCCTTAAAGG
TCTGCGGGACCCCCTTATAAAGAACTTGTTTCTCATAATATCCCACTCTC
TTGGTCGTTAAGGGGGGGAATTTACCTATATATCTCTTAAGGCTCATAGA
TCACNCATATCTCTCTGGGTAGCTTTACTAAAGATAGCTAGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_h11.g1 MSMg01no323_h11.g1 CHROMAT_FILE:
MSMg01no323_h11.g1 PHD_FILE: MSMg01no323_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:02 2005
         (541 letters)



>mm_chr11_67094020_67094962
          Length = 943

 Score =  988 bits (511), Expect = 0.0
 Identities = 535/543 (98%), Gaps = 2/543 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctggagatagagcatggataaagagaacttataaaattcctctcatggactttgaaac 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 agctggagatagagcatggataaagagaacttataaaattcctcccatggactttgaaac 260

                                                                       
Query: 61  attctcctattcaaatctgctagttctgcattatcaaagcacactcatgatcggtcccag 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attctcctattcaagtctgctagttctgcattatcaaagcacactcatgatcggtcccag 320

                                                                       
Query: 121 aacagcactaaaaccttttatcttcacatataaatgcctctggatatgttctcagttccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacagcactaaaaccttttatcttcacatataaatgcctctggatatgttctcagttccc 380

                                                                       
Query: 181 atgttccctttcttctgtggagttttggtacctgggcacatttctttttt-gttttctgt 239
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 atgttccctttcttctgtggagttttggtacctgggcacatttctttttttgttttctgt 440

                                                                       
Query: 240 tcattttgttgttcttgctcatagattgtcttttatagggggtggggatagggaaagtga 299
           ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 441 tcattttgttgttcttgctcatagattgtcttttaaagggggtgggggtagggaaagtga 500

                                                                       
Query: 300 cacaccagggaccccccc-actatgacagactggcctggactttcacaaggactctgtgc 358
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacaccagggaccccccccactatgacagactggcctggactttcacaaggactctgtgc 560

                                                                       
Query: 359 cctccttcctcagagttaccccggtgttggcttccgccagaggttatagtatccagaaac 418
           |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 cctccttcctcaaagttaccccggtgttggcttccgccggaggttatagtatccagaaac 620

                                                                       
Query: 419 tgccatatccaccgccaccgaatgactctccaggctttggagctaccccaaatttaaagt 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgccatatccaccgccaccgaatgactctccaggctttggagctaccccaaatttaaagt 680

                                                                       
Query: 479 cgcctgggctcccaatcacacttttcatacaaatctgttcagaaccatggcatcgatctg 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cgcctgggctcccaatcacacttttcatacaaatctgttcagaaccatggcatcgatctg 740

              
Query: 539 ctt 541
           |||
Sbjct: 741 ctt 743


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 943
Length adjustment: 10
Effective length of query: 531
Effective length of database: 933
Effective search space:   495423
Effective search space used:   495423
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)