BAC Information

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BAC

Clone NameMSMg01-324C07
Chromosome11 (Build37)
Map Location 119,308,776 - 119,483,795
singlet/doubletdoublet
Overlap geneRnf213, A730011L01Rik, Nptx1, 4932417H02Rik
Upstream geneC1qtnf1, D230014K01Rik, D11Bwg0517e, Enpp7, Cbx2, Cbx8, Cbx4, Tbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511
Downstream geneChmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324C07.T7 (MSMg01no324_c07.b1)MSMg01-324C07.TJ (MSMg01no324_c07.g1)
ACCAG442374AG442375
length715731
length of high quality
(start - end)
532 (73 - 604)268 (81 - 348)
definitionCHROMAT_FILE: MSMg01no324_c07.b1 PHD_FILE: MSMg01no324_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:22 2005CHROMAT_FILE: MSMg01no324_c07.g1 PHD_FILE: MSMg01no324_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,308,776 - 119,309,307)(119,483,528 - 119,483,795)
sequence
TCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAACAATACCCGTTGAGTGGCAATTTGATTTCTTACCCAGT
CTCGGTTAGCTGTGTATCGTGGTTGCACATACTCATAATCCCAGATTTCT
GGAGGCTAAGGCAGGAGGGCTACAGGTTCAAAGCCAGCCTGGATTACACA
AAACAACTTCTATCAAAAGCAAAAAAGCAAACGAGCAAACAAGCAAGCTT
TGGGCATACCACAGTGGCTTCAGCAGTCCCTTGTCTACCTTAGGCGAGCA
CTGCATCTGACTCCCCCCTTCCATGGCACAGGGATTCTGAGATCTTCCCA
CCCCACCAGCACCAACACACCAGCCTTACCTTCATTCCCCTTTGGTTTTG
TGCACAGACTTTTTGTGGGACAAATGTTATCTTTATGTCACTAGCCAGCT
CTCTCCTGCTACAAGACAGGTGTGTTCCACGAGTCAGAAATACCCGTGCC
TCATGCACCTTTACCAATTATAGTGTGCTGGCTACAGGAAGATGTGAGTG
GGGAGCCTAGAGTCATCCGTGGACCCTTTTTAAGAGATAATTTTGTCTTA
AACAGTACTTATGTTGATTTTGCTGGCATCTCCTAATGCTCTCTCACATG
TCCAAATGCCCAGACTTCGGGGTACTGGACACTCATTTAAAAGTGGTGCA
ATTAAAATGCCATTT
TTTACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTCACTACCAACAGCCTG
AGGAAGAACATGGTTGTAAAAAAGGTTGAACATTTCTCAGCTACATAATC
ACCAACCTCTTTGAAATATCTTAACTCCTTCCCATGTTTTAAAAGGACAC
TCCCTTGGAAAGAATGGCAGCTCCCAGTGAGTGACATGTAGCAGGACATG
AAGTGAGAGGGTCTGAGCCTGACTTGGGGTGGGGGGTGGGGGGCGCCTAT
CCCTTGGGCAGATGGTCGGTGTCAATGTAGCAAATCTCTAGCCACAAGAC
TAGGAAGAGTCCAGAGAGCCTTTGATGGCTATCACGGTGGGCTGTGACTC
TGCAATCATAGCATCAGCCCCCCCCCCACTATTAAGCCAGAGCAGAAAAC
CTGCTCTGACCTTAGTTAGTGCCACTCCCTCCCACGAAGGTTGTGTGCAC
GAACACTTGCAGAAACTACTAACAAGACTGCTTGTGCCTGAGAATGTTCA
TCTACCGGCTCAATGTCTGATCTTATCCCCCCTCTGACCACTCCTTTTGT
AAGTCCAGTATCCTCCTCTAAAAAAACTTCTTTGTGCCCTTTTAAAAACC
GCCCTCTTTTTTTTTATTTACAATATTGTATCATATTCCCGCAATTTNTT
TCACTTCTCTTTCCAGTACAAATATAGATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_c07.b1 MSMg01no324_c07.b1 CHROMAT_FILE:
MSMg01no324_c07.b1 PHD_FILE: MSMg01no324_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:22 2005
         (532 letters)



>mm_chr11_119308576_119309507
          Length = 932

 Score =  975 bits (504), Expect = 0.0
 Identities = 525/532 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagtggcaatttgatttcttacccagtctcggttagctgtgtatcgtggttgcacatac 60
           ||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||
Sbjct: 201 tgagtggcaatttgatttcttacccagtcacagttagctgtgtatggtggttgcacatac 260

                                                                       
Query: 61  tcataatcccagatttctggaggctaaggcaggagggctacaggttcaaagccagcctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcataatcccagatttctggaggctaaggcaggagggctacaggttcaaagccagcctgg 320

                                                                       
Query: 121 attacacaaaacaacttctatcaaaagcaaaaaagcaaacgagcaaacaagcaagctttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attacacaaaacaacttctatcaaaagcaaaaaagcaaacgagcaaacaagcaagctttg 380

                                                                       
Query: 181 ggcataccacagtggcttcagcagtcccttgtctaccttaggcgagcactgcatctgact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcataccacagtggcttcagcagtcccttgtctaccttaggcgagcactgcatctgact 440

                                                                       
Query: 241 ccccccttccatggcacagggattctgagatcttcccaccccaccagcaccaacacacca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccccccttccatggcacagggattctgagatcttcccaccccaccagcaccaacacacca 500

                                                                       
Query: 301 gccttaccttcattcccctttggttttgtgcacagactttttgtgggacaaatgttatct 360
           |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 gccttatcttcattcccctttggttttgtgcacagactttttgtgggagaaatgttatct 560

                                                                       
Query: 361 ttatgtcactagccagctctctcctgctacaagacaggtgtgttccacgagtcagaaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttatgtcactagccagctctctcctgctacaagacaggtgtgttccacgagtcagaaata 620

                                                                       
Query: 421 cccgtgcctcatgcacctttaccaattatagtgtgctggctacaggaagatgtgagtggg 480
           |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 621 cccgtgcctcatgcacctttactaattatagtgtggtggctacaggaagatgtgagtggg 680

                                                               
Query: 481 gagcctagagtcatccgtggaccctttttaagagataattttgtcttaaaca 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagcctagagtcatccgtggaccctttttaagagataattttgtcttaaaca 732


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no324_c07.g1 MSMg01no324_c07.g1 CHROMAT_FILE:
MSMg01no324_c07.g1 PHD_FILE: MSMg01no324_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:23 2005
         (268 letters)



>mm_chr11_119483328_119483995
          Length = 668

 Score =  518 bits (268), Expect = e-151
 Identities = 268/268 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttcactaccaacagcctgaggaagaacatggttgtaaaaaaggttgaacatttctcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 acttcactaccaacagcctgaggaagaacatggttgtaaaaaaggttgaacatttctcag 409

                                                                       
Query: 61  ctacataatcaccaacctctttgaaatatcttaactccttcccatgttttaaaaggacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ctacataatcaccaacctctttgaaatatcttaactccttcccatgttttaaaaggacac 349

                                                                       
Query: 121 tcccttggaaagaatggcagctcccagtgagtgacatgtagcaggacatgaagtgagagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tcccttggaaagaatggcagctcccagtgagtgacatgtagcaggacatgaagtgagagg 289

                                                                       
Query: 181 gtctgagcctgacttggggtggggggtggggggcgcctatcccttgggcagatggtcggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gtctgagcctgacttggggtggggggtggggggcgcctatcccttgggcagatggtcggt 229

                                       
Query: 241 gtcaatgtagcaaatctctagccacaag 268
           ||||||||||||||||||||||||||||
Sbjct: 228 gtcaatgtagcaaatctctagccacaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space:   170681
Effective search space used:   170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)