BAC Information

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BAC

Clone NameMSMg01-324I20
Chromosome11 (Build37)
Map Location 66,141,043 - 66,328,290
singlet/doubletdoublet
Overlap geneGm879
Upstream geneMap2k4, Zkscan6, Dnahc9
Downstream geneLOC668323, A530088H08Rik, 9130409J20Rik, A730055C05Rik, 2310004I24Rik, Sco1, Myh3, Myh2, Myh1, Myh4, Myh8, Myh13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324I20.T7 (MSMg01no324_i20.b1)MSMg01-324I20.TJ (MSMg01no324_i20.g1)
ACCAG442672AG442673
length721766
length of high quality
(start - end)		248 (45 - 292)316 (74 - 389)
definitionCHROMAT_FILE: MSMg01no324_i20.b1 PHD_FILE: MSMg01no324_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:53 2005CHROMAT_FILE: MSMg01no324_i20.g1 PHD_FILE: MSMg01no324_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,328,048 - 66,328,290)(66,141,043 - 66,141,358)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCTCCAGCCCCTCTTGCAGATTTTTTTCTATTGCTTCTTTTTTCAT
TTCATTTTCTCATGTTCTTAGAATCCACAACTTTTTCAGCTTTGAGAAGT
AGTGTTTGTTTACGCTGTCATAGCTGCAGGATGGCCAGCTGACCCTTCGA
GGAAAGGGTCCCAAGCTTTCAGACTGGGACCTACTTAGGACAGCTTGCCC
TACTTATGGGGGACAGAGGAGCTTTGTTCCATTTGAGGGTTCTTGCCTCA
GTGGGCCTTTGGGTTAACTAAATTTGTTGGGTCCCCCACAACCCCTTTGG
TTTTCCAAAAGGAAAGGGGGGTTTTTTCTTCCCGCGGGTTTTTTTTTTAG
AATAAACAACTCTCTCCCCTACTTCCATAGGAGATGGTGCTCTTTCTTTT
GTTTTTTACCCCGCTTCCTTCTTCCTTTTTCTACCCCTATTTTAATTTTT
CTACATTGTTATTTGCTCCACGCCTATTTTTTTTTTTTCTTTTTAATAAC
TTATTTCCCTCCTTCTCTTATTCCCTCCCCCCCTTTCCCCCTCCCCCCCC
CTTACCACCCTCCTCTTTTTTTCTTTTTTGGCCAATATCCATTTTTTTTT
TTTCCTTCCCCCCCCCCCTCCGGCCGTATGCATATTTAACACACCTATAT
ATCTTCCTTTTTTTCCTCTTT

CATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGGTTAGTGTATTGCAATCATTGTGT
TAATTCTGATGCAACCACATAGCACTGTACAATGAGGGACAGAGCCATGA
AGGGGAGTGAATACTGACTCCCAGTCCCTTCTGCTACTGCCTGTGTGGAA
GGTACCATTGTCTACCAAGGGAATTGTACTCCCTAGGAACAACAACAGTC
TTCACTGATGTAGGGGAGACACTTGTGAGAACCAACGTTGAACTGATGAG
AAAAGCTAGGAGAATCCATCCTGTCAAGGGGAGAAGGTGCGGGAATTTAC
CTCTAACTTGCACCACAAGCTACATTCTAGTTACTCTTCTATGGGGCCAG
TCATGCNACCCAAGCCTTGTATGAATCCGTTCCCATATCCATAGGAAGAT
CGTTTTTTTAAATAGCCCCCGAGCTTCCTCAGTAACAGCTGAGCAGAAAC
AGAGNAAGGAAGCTTTCTTCCCCTAGCCCAGTTTCAAACCTGGGTTGTNN
NTNNTGTCTGAAAAATCCTGGAAAGGGAATACCATGTCCGGTGGTCCCCG
GTTTTTTTGTTGTCTGAGGATCATGAAAGGCTATGTCGCGCTTTTTCTCC
CTTTTCTTTTCCCCCTCCCCTCCTTCTCTTTTTTCTCCCTTTTTTCCACT
TTATTTCCGTTCAATGTCTTGTTTTGCAGGAACCTCCGATAGCGTTACGT
AATCCCCGTCTTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_i20.b1 MSMg01no324_i20.b1 CHROMAT_FILE:
MSMg01no324_i20.b1 PHD_FILE: MSMg01no324_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:53 2005
         (248 letters)



>mm_chr11_66327845_66328492
          Length = 648

 Score =  439 bits (227), Expect = e-128
 Identities = 239/243 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccctccagcccctcttgcagatttttttctattgcttcttttttcatttcattt 63
           ||||||||||||||   ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 446 ggaattccctccaggaactcttgcagatttttctctattgcttcttttttcatttcattt 387

                                                                       
Query: 64  tctcatgttcttagaatccacaactttttcagctttgagaagtagtgtttgtttacgctg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tctcatgttcttagaatccacaactttttcagctttgagaagtagtgtttgtttacgctg 327

                                                                       
Query: 124 tcatagctgcaggatggccagctgacccttcgaggaaagggtcccaagctttcagactgg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tcatagctgcaggatggccagctgacccttcgaggaaagggtcccaagctttcagactgg 267

                                                                       
Query: 184 gacctacttaggacagcttgccctacttatgggggacagaggagctttgttccatttgag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gacctacttaggacagcttgccctacttatgggggacagaggagctttgttccatttgag 207

              
Query: 244 ggt 246
           |||
Sbjct: 206 ggt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no324_i20.g1 MSMg01no324_i20.g1 CHROMAT_FILE:
MSMg01no324_i20.g1 PHD_FILE: MSMg01no324_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:54 2005
         (316 letters)



>mm_chr11_66140843_66141558
          Length = 716

 Score =  572 bits (296), Expect = e-168
 Identities = 311/316 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggttagtgtattgcaatcattgtgttaattctgatgcaaccacatagcactgtacaat 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 ctggttaatgtattgcaatcattgtgttaattctgatgcaaccacatagcactgtactat 260

                                                                       
Query: 61  gagggacagagccatgaaggggagtgaatactgactcccagtcccttctgctactgcctg 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagggacagagccatgaaggagagtgaatactgactcccagtcccttctgctactgcctg 320

                                                                       
Query: 121 tgtggaaggtaccattgtctaccaagggaattgtactccctaggaacaacaacagtcttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtggaaggtaccattgtctaccaagggaattgtactccctaggaacaacaacagtcttc 380

                                                                       
Query: 181 actgatgtaggggagacacttgtgagaaccaacgttgaactgatgagaaaagctaggaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgatgtaggggagacacttgtgagaaccaacgttgaactgatgagaaaagctaggaga 440

                                                                       
Query: 241 atccatcctgtcaaggggagaaggtgcgggaatttacctctaacttgcaccacaagctac 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atccagcctgtcaaggggagaaggtgcgggaatttacctctaacttgcaccacaagctac 500

                           
Query: 301 attctagttactcttc 316
           ||||||||| ||||||
Sbjct: 501 attctagttcctcttc 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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