BAC Information

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BAC

Clone NameMSMg01-326K17
Chromosome11 (Build37)
Map Location 3,071,439 - 3,071,988
singlet/doubletsinglet
Overlap geneSfi1
Upstream geneLOC236604, LOC623257
Downstream geneEif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326K17.T7 (MSMg01no326_k17.b1)MSMg01-326K17.TJ (MSMg01no326_k17.g1)
ACCAG444231AG444232
length707713
length of high quality
(start - end)
649 (46 - 694)566 (85 - 650)
definitionCHROMAT_FILE: MSMg01no326_k17.b1 PHD_FILE: MSMg01no326_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:24 2005CHROMAT_FILE: MSMg01no326_k17.g1 PHD_FILE: MSMg01no326_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACGCAGTTCCATCCTTCTCAACAGTCTGTTTTACGGGAACACTTA
TGACCGTGACCCGCAGTTCTGGTTCCGGAATGAGGGATCTTCCTTGCGCC
GGTGATGGTAACCGTCCCAGGTTTTCTTGTCCCGGGTTATCTCGTCCCAG
GTCTTCTCGTCCCGGGTTTCGGCACAAACTCTTACACGCATTCACGAAAC
TGGCCAGGAAGAATGCAACAAACCGGAATCTTCTGCGGCAAAAGCTTTAT
TGCTTACATCTTCAGGAGCCAGAGCAAGAGTGCAAGAGTGCAAGAAAAAG
AACAAGAACAAGAAAGCAAGAGAGAGAAAGAAAGCAAGAAAAAGAACAAG
AAAAAGAAAGCAAGACAAAGAATGGCAAAACCCTGTCCCTTTTAAGGAGA
ATTATCCTCCGCCTAGGACGTATTACTCCCTGATTGGCTGCAGCCCATCG
GCCCAATTGTCATCATGGGAAAGGCAGAACACATGGCGGGAAAACTGCCC
CTGCACGTGTGCAGACTATGTTTACCACTTAGAACACAGCTGTCAGCGCC
ATCTTATAATGGCAAATGTGAGGGCGGCTCCTCACAAATTACGGAAAATG
AGAAATACACACGTTAGGACGTGAAATATGGCGAGGAAAACTGAAATAGG
TGGAAAA
CTTCCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGTGTAGAACAGGC
TGCCTTGAACTCACAGAGATCCATCTGCCTCTGCCTCCAGAGTGCTAGGA
TTAAAGGTGTGTGCCATCATCTTCCTGGTTTCATAGATTGTTTTCTATTG
TTAGTGATGTGCATTTTCTTGGTGAAGTGTATCCTGCTGCCTTCCTTGTC
ATTTATAGTTATAATGGATATGGCTGAACGTTTTGTAGTAGAAAGGAAAG
TAGGTTGATTTTTTTTTAAGGTATAAGATTGTTCCCACAGTTGGGAAAAT
GGGTGTTACTGAACTGCTTTGCAAGGCAAGCATGAGCACCTGAGTTCAGT
TCCTTAGAACCACGTGAAAAGCCAGCCACGCTTCCACTCCCAGCACGGGG
AAGTGGAGGCAGGAGGATTCCTGTGGCTCCTGGCTTAGCTAATCTAGTTT
AATTGGTCAGCTCCAAGTTTACTGAGAGGCCCTGTCTTGAAAAATAAGGT
CAGATATGTTAGTGCACACCTCTAATCCTAGCACTTTGGGAGACAGAGGT
AAGCGGATTCTATGAGTTTGAGGATAGCCTGGTCTACCCTCCTAGAGAGA
GTTCCAAACCTGCCAGGCTACATAGAGACTTGGTCTCAAAGAAACATAAG
GAGGAGGTGGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_k17.g1 MSMg01no326_k17.g1 CHROMAT_FILE:
MSMg01no326_k17.g1 PHD_FILE: MSMg01no326_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:25 2005
         (566 letters)



>mm_chr11_3071439_3072408
          Length = 970

 Score =  942 bits (487), Expect = 0.0
 Identities = 537/563 (95%), Gaps = 18/563 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgtgtagaacaggctgccttgaactcacagagatccatctgcctctgcctccagagtg 60
           |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 actgagtagaccaggctgccttgaactcacagagatccatctgcctctgcctccagagtg 491

                                                                       
Query: 61  ctaggattaaaggtgtgtgccatcatcttcctggtttcatagattgttttctattgttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 490 ctaggattaaaggtgtgtgccatcatcttcctggtttcatagattgttttctattgtaag 431

                                                                       
Query: 121 tgatgtgcattttcttggtgaagtgtatcctgctgccttccttgtcatttatagttataa 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tgatgtgcattttcttggtgatgtgtatcctgctgccttccttgtcatttatagttataa 371

                                                                       
Query: 181 tggatatggctgaacgttttgtagtagaaaggaaagt-aggttga----tttttttttaa 235
           ||||||||||||||||||||||||||||||||||||| | |||||    |||||||||||
Sbjct: 370 tggatatggctgaacgttttgtagtagaaaggaaagtca-gttgatttttttttttttaa 312

                                                                       
Query: 236 ggtataagattgttcccacagttgggaaaatgggtgttactgaactgctttgcaaggcaa 295
           |||||||| |||||||||||||||||||||||||||            ||||||||||||
Sbjct: 311 ggtataagtttgttcccacagttgggaaaatgggtg------------tttgcaaggcaa 264

                                                                       
Query: 296 gcatgagcacctgagttcagttccttagaaccacgtgaaaagccagccacgcttccactc 355
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 263 gcatgagcacctgagttcagttccttagaaccacgtgaaaagccaggcacgcttccactc 204

                                                                       
Query: 356 ccagcacggggaagtggaggcaggaggattcctgtggctcctggcttagctaatctagtt 415
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ccagcatggggaagtggaggcaggaggattcctgtggctcctggcttagctaatctagtt 144

                                                                       
Query: 416 taattggtcagctccaagtttactgagaggccctgtcttgaaaaataaggtcagatatgt 475
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 143 taattggtcagctccaagtttactgagaggccctgtcttgaaaaataaggtcagatgtgt 84

                                                                       
Query: 476 tagtgcacacctctaatcctagcactttgggagacagaggtaagcggattctatgagttt 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  tagtgcacacctctaatcctagcactttgggagacagaggtaagcggattctatgagttt 24

                                  
Query: 536 gaggatagcctggtctaccctcc 558
           |||||||||||||||||||||||
Sbjct: 23  gaggatagcctggtctaccctcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 970
Length adjustment: 10
Effective length of query: 556
Effective length of database: 960
Effective search space:   533760
Effective search space used:   533760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)