BAC Information

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BAC

Clone NameMSMg01-327A07
Chromosome11 (Build37)
Map Location 94,778,286 - 94,778,854
singlet/doubletsinglet
Overlap genenone
Upstream geneMbtd1, Nme2, Nme1, Spag9, LOC100039431, LOC100039440, Tob1, Wfikkn2, 3300001P08Rik, Ankrd40, Abcc3, Cacna1g, Spata20, Epn3, Mycbpap, Rsad1, BC018371, Chad, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92, LOC100039410, LOC544807, LOC544808, LOC665174, LOC432591, LOC100039739
Downstream geneCol1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2, Itga3, Dlx3, Dlx4, LOC100039437, Tac4, Myst2, 5730593F17Rik, Slc35b1, Spop, LOC100039483, Nxph3, Ngfr, Phb, 1110035M17Rik, Zfp652, EG665273, Phospho1, Abi3, Gngt2, LOC100040014, B4galnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327A07.T7 (MSMg01no327_a07.b1)MSMg01-327A07.TJ (MSMg01no327_a07.g1)
ACCAG444488AG444489
length735742
length of high quality
(start - end)
611 (48 - 658)525 (78 - 602)
definitionCHROMAT_FILE: MSMg01no327_a07.b1 PHD_FILE: MSMg01no327_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:50 2005CHROMAT_FILE: MSMg01no327_a07.g1 PHD_FILE: MSMg01no327_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTCCTGACTCAAATTCAAGCAAAGAACAGGCTGCTGCTCTGC
GTGCTGTTCTTGGGAAGCTACAGTAGACAGCTTAGGCCTTAGTCTTTAGA
AAACCTGGCATCTTCTGACCTTGGATGCTTGAGGGCTGAAGGTGGACAGT
CCTCAGAGATGGATGCGGTCCAGATCCAAAGCCATCTGACAGAGCCACTA
ATATTTACTGCCATTTCTAATGACCTATAATTGTGGTTTGGGGTTTTCTA
ATTCAGTACAAATAGGAATAAGGAAAGAAAGCGACAGACAGGATTTGAAA
ACCCTTCTGCTTCCTTGTAACCGCTGTGTCCCTCATGTTAATTTGGGGTA
ATTATCCCTCGTTGCTCCCACCACGCTGCAATTTTTTTATTATTATTATT
TTGGAAATAAATGCTTCTAAAGTTGTCTAAAACTTGGTGGTCGGTGTGTG
AGTTTAATGCTGGCTAGGGAATGTGAGAAACGGAGTGGTAGCCCACCGCT
TTAAACCCAAGCGCTCAGGAGGCAGAGACACGCAGATCTCTTTTGAGGTT
CAGGTCATCTGGGTCTTCAGAGAGTTCCAGGTCAGTCTGAGCTAAAGAGG
AGAGTGGGTCCTGCGGTGGGGGTGCCAATGACTTTTCCCCCTTTCCATCC
TCCCATCCTCTTGTCTTTTCCCCCCCGCCTTTCTC
CCCGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCAGCCTGGTCTACAAAGT
GAGTTCCAGGACAGCCAGGGCTACACCGAGAAACCCTGTCTTAAAAAACA
AAACAAAACAAAACAAAACAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGTAAAGACAGCTGC
TAAAATAGATTTCCCTTGTCACCCAGTTGGCCCCAGATATTAGAAAAAAA
AATTCTAAACATTAGAAAACTGTAAAGGTCTGAGTAGGTCCCAGTTGCTA
GAGGCAGCTTCAAGGGCGTGCAGCAACAGAGCACTGACTGGGACTTACTT
TTGCATAAACGGAAAGCCATGCCCCCCCTCTCTGATGATGAGCTGTAGTT
AGATACCCAGCAAAATTGTGGTGTCTCATCCTCTCTGTCAGAGGAAACCA
ACTGTTCAGGACTCACCCAATGCCAAGCACCTGTGATTGTTCAACTAACC
AGTTCTGCTGCCTTCATCCAGAGTCAACAAAACCCAGCGATCCTGGGAAC
ATAAGGCGCAAATTTTAGTCCATGTTACCTAGGTTGAAGAGACAGGCATC
ATGCCGCCCTGCTGGACACCCTGCCATGTACCTCATCTGCCTGCGAAGAA
ACCTGGGACCCCTGCTTCTCACGAGTCTGATTCCTCTCGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_a07.b1 MSMg01no327_a07.b1 CHROMAT_FILE:
MSMg01no327_a07.b1 PHD_FILE: MSMg01no327_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:50 2005
         (611 letters)



>mm_chr11_94778286_94779296
          Length = 1011

 Score = 1002 bits (518), Expect = 0.0
 Identities = 557/570 (97%), Gaps = 2/570 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttcctgactcaaattcaagcaaagaacaggctgctgctctgcgtgctgttctt 64
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gaattctttccagagtcaaattcaagcaaagaacaggctgctgctctgcgtgctgttctt 510

                                                                       
Query: 65  gggaagctacagtagacagcttaggccttagtctttagaaaacctggcatcttctgacct 124
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gggaagctgcagtagacagcttaggccttagtctttagaaaacctggcatcttctgacct 450

                                                                       
Query: 125 tggatgcttgagggctgaaggtggacagtcctcagagatggatgcggtccagatccaaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 449 tggatgcttgagggctgaaggtggacagtcctcagagatggatgcggtccaaatccaaag 390

                                                                       
Query: 185 ccatctgacagagccactaatatttactgccatttctaatgacctataattgtggtttgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ccatctgacagagccactaatatttactgccatttctaatgacctataattgtggtttgg 330

                                                                       
Query: 245 ggttttctaattcagtacaaataggaataaggaaagaaagcgacagacaggatttgaaaa 304
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 329 ggttttctaattcagtacaaataggaataagaaaagaaagcgacagacaggatttgaaaa 270

                                                                       
Query: 305 cccttctgcttccttgtaaccgctgtgtccctc-atgttaatttggggtaattatccctc 363
           ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 269 cccttctgcttccttgtaaccgctgtgtccctcta-gttaatttggggtaattatccctc 211

                                                                       
Query: 364 gttgctcccaccacgctgcaatttttttattattattattttggaaataaatgcttctaa 423
           ||||||   || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gttgcttttacaacgctgcaatttttttattattattattttggaaataaatgcttctaa 151

                                                                       
Query: 424 agttgtctaaaacttggtggtcggtgtgtgagtttaatgctggctagggaatgtgagaaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 agttgtctaaaacttggtggtcggtgtgtgagtttaatgctggctagggaatgtgagaaa 91

                                                                       
Query: 484 cggagtggtagcccaccgctttaaacccaagcgctcaggaggcagagacacgcagatctc 543
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90  cgaagtggtagcccaccgctttaaacccaagcgctcaggaggcagagacacgcagatctc 31

                                         
Query: 544 ttttgaggttcaggtcatctgggtcttcag 573
           |||||||||||||| |||||||||||||||
Sbjct: 30  ttttgaggttcaggccatctgggtcttcag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)