BAC Information

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BAC

Clone NameMSMg01-329M11
Chromosome11 (Build37)
Map Location 63,976,034 - 64,161,852
singlet/doubletdoublet
Overlap geneEG544785
Upstream geneLOC433423, LOC100042799, LOC100041690, LOC654442, LOC668297, Hs3st3b1, Cox10, 2810001G20Rik
Downstream geneHs3st3a1, LOC626959, Elac2, AU040829, 1700086D15Rik, LOC100041790, Myocd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329M11.T7 (MSMg01no329_m11.b1)MSMg01-329M11.TJ (MSMg01no329_m11.g1)
ACCAG446513AG446514
length764851
length of high quality
(start - end)		393 (42 - 434)180 (78 - 257)
definitionCHROMAT_FILE: MSMg01no329_m11.b1 PHD_FILE: MSMg01no329_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:21 2005CHROMAT_FILE: MSMg01no329_m11.g1 PHD_FILE: MSMg01no329_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,161,484 - 64,161,852)(63,976,034 - 63,976,212)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGA
ATTCAATTCCTCTTCCATTCCTTAAGAGATGGGCTTTGAGGATTAGACCC
AACAGAGTACTTGGTAGCAAAGGCTACATTCTAGACTCTGAACAATGGGG
AGCAAAATGAGAACTGGAGGAAGCAGAGTAGGATACGGCAGTGCTGGACC
CATGTGTCCCCTGTGCACAGCTCCTGACCTCTTTACCCATGGTACTGTAA
GATGGAGAACCCAGGAGACCATTACTAGAAGAGATGTAAGAATTTTCATC
AAGCCAATGTAAAAGAACACGAATAGCAGAAAGTAAAATCTAGAGATAAA
GCAGCTGATCCAATCCATCAAGTAATAAAGAAGCCTAGAAGATGGCAGGG
GAGAGGAGAGGGCAGAACCCACGCGTAAGTGGAGGTGTCCCTGTTCTTTC
CTGCTCGCCCTCTGTCCTTTCTCCTTCGTGCTCTGGCTGCGCTCGGCCTT
TTCGTTTCCCTTTTTATCCCTTTACTCCCTTTTCCCCTACTCCATACAGT
TATTTTCTCATTTTCCCTCTTCCTTTCTTTATGGTCCTGGTTTTCTCTCT
TTTCCTCCATTTCTTCGCATGTACTTTCTTTTCATTCTCTTTTGTTCTTC
TCTCTTTCTCTCACCGTTTCTTTACCTGTTTACTTCTTTTTGTCCTTTTA
TTACGTCGTCCTTTTCCTCCCCATCCTTTCTTTTCTCTCTTTTATTACGC
TCTTTCTCTCTCTT

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAACACAGAAGTTTGTGATACAT
AATCATTTATTGCATAGTGTATCCTTTGAGATCCACCTGGTTAAGATTCT
AGAATTTACCTAGTGACTGATATGGGCTGTAAGATATGGCAGCCATGCTG
TCTACCTGGCTACCTTCTTTGATCTTCACCAGCTTGGGGGTGTGTGTGGG
GGGGAGNTTNNNNNNNNNNNNNNCNTNNNNNNNNNNNNNNTTTNNTTTCT
TCTTNTCTNNNTTNNNNCTNNTTTTTTTTTTTTCNNNTNNTNNGCTGTTC
GGGGCTGCTGCCGGGGTGGTTTTTTTCCCCCCCCCCTTCTTGTTTTCTTT
TTTTTGTCCTCTTCCGGTTTGGTTTTTGTCCCCCCCCCCNNNNTNNNGNT
TGTTGTGTTTCCCTCGCCTTTCCGGTCCCCCGTCTGTCTCTCCGCTCTCT
CCCTCCTTTCCCTCTCCTGTTCCGTTGATGTCTTCTTCCTATTCCTCTAG
CACGTTCTTTCCCTACCTCTCTTCCACTGTTTCGTCACTTACTTCTCCTC
TTTCCCACTTCTTTTCTTCTCTTATTTATATAGTCCGTCTTTCTCGGATC
GTTTCAATCATCTATTCGTCCTCCTTTCCATCTTTCCGTTCTTCCTTTTG
TGCTCTTTTTCCCCCTGCATCTTTTATCCTTGTCTCGTTATCTCATTTCT
CTTCTTTGCCCCCACCTCTCCTACATTTTCTTTCTTCCCACTCTTTCTGC
CTTTTTCCCCTGCATACGTTCGTGCTGTGTTTCATGTCCTGTTTTCTTCC
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_m11.b1 MSMg01no329_m11.b1 CHROMAT_FILE:
MSMg01no329_m11.b1 PHD_FILE: MSMg01no329_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:21 2005
         (393 letters)



>mm_chr11_64161277_64162069
          Length = 793

 Score =  683 bits (353), Expect = 0.0
 Identities = 365/369 (98%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcaattcctcttccattccttaagagatgggctttgaggattagacccaacagagt 67
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gaattcaattcctcttacattccttaagagatgggctttgaggattagacccaacagagt 517

                                                                       
Query: 68  acttggtagcaaaggctacattctagactctgaacaatggggagcaaaatgagaactgga 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 acttggtagcaaaggctacattctagactctgaacaatggggagcaaaatgagaactgga 457

                                                                       
Query: 128 ggaagcagagtaggatacggcagtgctggacccatgtgtcccctgtgcacagctcctgac 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ggaagcagagtaggatacggcagtgctggacccatgtgtcccctgtgcacagctcctgac 397

                                                                       
Query: 188 ctctttacccatggtactgtaagatggagaacccaggagaccattactagaagagatgta 247
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ctctttacccacggtactgtaagatggagaacccaggagaccattactagaagagatgta 337

                                                                       
Query: 248 agaattttcatcaagccaatgtaaaagaacacgaatagcagaaagtaaaatctagagata 307
           ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 336 agaattttcatcaagccaatgtaaaagaacacgaaaagcagaaagtaaaatcaagagata 277

                                                                       
Query: 308 aagcagctgatccaatccatcaagtaataaagaagcctagaagatggcaggggagaggag 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 aagcagctgatccaatccatcaagtaataaagaagcctagaagatggcaggggagaggag 217

                    
Query: 368 agggcagaa 376
           |||||||||
Sbjct: 216 agggcagaa 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space:   301056
Effective search space used:   301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no329_m11.g1 MSMg01no329_m11.g1 CHROMAT_FILE:
MSMg01no329_m11.g1 PHD_FILE: MSMg01no329_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:21 2005
         (180 letters)



>mm_chr11_63975834_63976413
          Length = 580

 Score =  339 bits (175), Expect = 8e-98
 Identities = 178/179 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caacacagaagtttgtgatacataatcatttattgcatagtgtatcctttgagatccacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caacacagaagtttgtgatacataatcatttattgcatagtgtatcctttgagatccacc 260

                                                                       
Query: 61  tggttaagattctagaatttacctagtgactgatatgggctgtaagatatggcagccatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggttaagattctagaatttacctagtgactgatatgggctgtaagatatggcagccatg 320

                                                                      
Query: 121 ctgtctacctggctaccttctttgatcttcaccagcttgggggtgtgtgtgggggggag 179
           |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 ctgtctacctggctaccttctttgatcttcaccagcttgggggtttgtgtgggggggag 379


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 580
Length adjustment: 8
Effective length of query: 172
Effective length of database: 572
Effective search space:    98384
Effective search space used:    98384
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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