Query= MSMg01no329_n24.b1 MSMg01no329_n24.b1 CHROMAT_FILE:
MSMg01no329_n24.b1 PHD_FILE: MSMg01no329_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:29 2005
(590 letters)
>mm_chr11_90613286_90614275
Length = 990
Score = 1069 bits (553), Expect = 0.0
Identities = 580/589 (98%)
Strand = Plus / Minus
Query: 1 aatattattttctttccaaatgttgggccctatttcatctagtctccaaaggtgatcaat 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 616 aatattattttctttccaaacgttgggccctatttcatctagtctccaaaggtgatcgat 557
Query: 61 gcaataaagctgcctagaagttactcagtgatctaagctaaggtatacatgaatatggtc 120
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 556 gcaataaagctgcctagaagttactcagtgatccaagctaaggtatacatgaatatggta 497
Query: 121 ttttatcagacattggagaatctgctttgaaacacaaatgcacagagcctgagtaatatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 496 ttttatcagacattggagaatctgctttgaaacacaaatgcacagagcctgagtagtatt 437
Query: 181 gtagttcaagaatgttttttgtacatttaatcctaaattctctaaatcagtaatcattga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gtagttcaagaatgttttttgtacatttaatcctaaattctctaaatcagtaatcattga 377
Query: 241 cttctcccatttataaagaattcaggctgtaagtaactgtgaaatgttatatccattcat 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cttttcccatttataaagaattcaggctgtaagtaactgtgaaatgttatatccattcat 317
Query: 301 tatggagtatttaaagagtatttaaatttaagaataaaggaagtgttttcacacatttac 360
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 316 tatggagtatttaaagagtatttaaatttaagaataaaggaagtgttttcaaatatttac 257
Query: 361 aatagaatttaatttaactaatgaataatgtatgagttcttaaaagtggtaaagagtata 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aacagaatttaatttaactaatgaataatgtatgagttcttaaaagtggtaaagagtata 197
Query: 421 ataattattatttgttaattttttataaaagtagtcattatctttgttcattatttttat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ataattattatttgttaattttttataaaagtagtcattatctttgttcattatttttat 137
Query: 481 gaaaactaaaagtttacatattcagttaatatgcctttgaatgtttctatcctcaaatat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 gaaaactaaaagtttacatattcagttaatatgcctttgaatgtttctatcctcaaatat 77
Query: 541 ccccagaggatgtttttcctttgtgtacatatatgtacttgtatatatg 589
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 ccccagaggatgtttttcctttgtgtacatatatgtacttgtatatatg 28
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space: 568400
Effective search space used: 568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no329_n24.g1 MSMg01no329_n24.g1 CHROMAT_FILE:
MSMg01no329_n24.g1 PHD_FILE: MSMg01no329_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:29 2005
(559 letters)
>mm_chr11_90447270_90448228
Length = 959
Score = 980 bits (507), Expect = 0.0
Identities = 546/563 (96%), Gaps = 8/563 (1%)
Strand = Plus / Plus
Query: 1 aatgtgtgctttgagagacttctttcactgtacatgtgactgtgatggataaattcattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgtgtgctttgagagacttctttcactgtacatgtgactgtgatggataaattcattc 260
Query: 61 ttatggatcccattggagaaaaaaaggactgctcacacttgacaataatatcttctgtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatggatcccattggagaaaaaaaggactgctcacacttgacaataatatcttctgtgt 320
Query: 121 gataataagcagaaggcaacaagcagaatttcatgaattaataatgactattgcacaacc 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgataagcagaaggcaacaagcagaatttcatgaattaataatgactattgcacaacc 380
Query: 181 ttttgatctacagcctcaagaggaaaccattggcacgcagagcatcttgcacaacggcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttgatctacagcctcaagaggaaaccattggcacgcagagcatcttgcacaacggcca 440
Query: 241 ccagtctggcgcttttgctttcaaactactgcagactgacaacagtctttcttatctgcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccagtctggcgcttttgctttcaaactactgcagactgacaacagtctttcttatctgcc 500
Query: 301 ccaaatcccgtcagtaagaaggaaatagattactcattcagagcccccg----ctttgct 356
|||||||| ||| ||||||||||||||||||||||||||||||| | |||||||
Sbjct: 501 ccaaatcctgtcggtaagaaggaaatagattactcattcagagc----gtgtgctttgct 556
Query: 357 ttgcagctgctcaaaaagcgctacaggctcacacaagtccctactttaccgccacactga 416
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 557 ttgcagctgctcaaaaagcgctacaggctcacacaagtccctactttatcgccacaatga 616
Query: 417 aaactagcactgccttggcttgagcgatgggcacagcaaccttgagaactgcttagcagc 476
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 617 aaactagcactgccttggcttgagcgatgggcacagcaactttgagaactgcttagcagc 676
Query: 477 atgagacaggcctgcctggaacgtcatgaagttaagcacataagactcacatcagcatcg 536
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 677 atgagacagacctgcctggaacgtcatgaagttaagcacataaggctcacatcagcatcg 736
Query: 537 ggagagggagctgtacagctcag 559
|||||||||| ||||||||||||
Sbjct: 737 ggagagggagatgtacagctcag 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
