BAC Information

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BAC

Clone NameMSMg01-330O20
Chromosome11 (Build37)
Map Location 100,908,835 - 100,909,078
singlet/doubletsinglet
Overlap geneAtp6v0a1
Upstream geneKrt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf
Downstream geneNaglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330O20.T7 (MSMg01no330_o20.b1)MSMg01-330O20.TJ (MSMg01no330_o20.g1)
ACCAG447354AG447355
length763762
length of high quality
(start - end)		239 (132 - 370)237 (130 - 366)
definitionCHROMAT_FILE: MSMg01no330_o20.b1 PHD_FILE: MSMg01no330_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:45 2005CHROMAT_FILE: MSMg01no330_o20.g1 PHD_FILE: MSMg01no330_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAACCAGCCTGGGATACATGAGACCCTGTTTACAAAATAACACA
ACAACAAAAAAACCCACATAATATATACCCTATCAAAGCCATGCAGTAGT
GGTGCACATCTTTGATCTCAGAGGCAGAAGCAGGTGGATTTCTGAGTTTG
AGGCCAGCCTGCTCTACAGAGTGAGTTTCAGGACTGTCAGGGCTACAAAG
AGAAACCCCATCTTGAAAAACAAGGAAAAACAAATGATAGAGCTCTGAGT
GCTCTTGCCTCAGCCCAGTTACCCCGTGAACCTCTGTAGATTTGCAGGCT
CCTGACGGCTGGGTTCTTTAATACTTGCCCNNAACGGNCCCCAAGAAATA
TACCCTTGGGGCTCTGTAGTTTTGCTTTAGACCAAAAAAAAAGATATATA
GACTAGGCTAGCCTTGACTCCACAGCCCTGCCTCCATCTTCCCGACCCTG
GGACACTAAGCATAAGCCAACAAGCCTCGCACACGCTGCCTGGGCTTTGC
TCATGTTTATAACGGTTGGAAAGGGCCTGTGGTTGAACAGTGGGTTTGCG
ATAAGGGTCAGGGGTCTCGATTCTCCTGATAAGGGCACACTGTGTTGAAA
ACCTTCAACCCTTACTCTCTGACCTCCATAGACCCTGTCCCTCCCTGTGG
TCGTTATCGTCCATGGCAGCCAGGACCACAATGCTACTGCCACCGTGCTG
TGTGACAATGCCC

ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTCCAAAAAAAGAGTTTTAAAAACGTAAAGTAAGGC
AGATCCCTTTCCATCAGAGGTTTCTGCCCCAGTGAAAGGGACTGAGGAAG
CAGCCCCTGGACCACTTCCTGTGAGTTCTATCAACCCAAAGCTGGAGGAC
TGCCTGCCTGCAGCGTGACTGCTCCAGTAAGCTTGAACAATGTGGAGACA
GGGCTGGGAACTTCCCTGTGGCTCCCTTCCTTAGCTTTAGCTTTTGGGGT
ACCTCTTTTACTACAACTCGCTGGCCATTTCAGACCCCAAGGTTTATTGG
GGTAGACTCCCCTTGTATTATTTTTCACTCCTACCAGGCTCACAGAAAAG
GCCACGGGAGGAGCTCTACGGAAGCTACCTTGTTTGAGACAGGGTTTCTC
TGTGTAGCCCTGGCTGTCTTGAAACTCATTTTATAGACCAGGCTGGCCTC
GAACTCAGAGATCTGCCTGCCTCTGCCTGGGACTAAAGGCATGCACTACA
CCCAGCAATGTTAGGTACCATAAAAAGATTGCCTCTAAGAAGACAACTCT
ATTAAGAAACACTGAGAGGCCGAATATTGCTTTAGTTTAAAATAGGTCCC
GAGACATGGCTCTCCTTCTAGGTATTGCATATTGCTTACTTGCGTCTCAG
TAGATGACACATATGTGCCGAAGGCCAAGACTCCTACCTGATAACAATGT
CCTGTAGGAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_o20.g1 MSMg01no330_o20.g1 CHROMAT_FILE:
MSMg01no330_o20.g1 PHD_FILE: MSMg01no330_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:45 2005
         (237 letters)



>mm_chr11_100908660_100909296
          Length = 637

 Score =  426 bits (220), Expect = e-124
 Identities = 235/244 (96%), Gaps = 7/244 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagtgaaagggactgaggaagcagcccctggaccacttcctgtgagttctatcaacccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 cagtgaaagggactgaggaagcagcccctggaccacttcctgtgagttctatcaacccaa 360

                                                                       
Query: 61  agctggaggactgcctgcctgcagcgtgactgctccagtaagcttgaacaatgtggagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 agctggaggactgcctgcctgcagcgtgactgctccagtaagcttgaacaatgtggagac 300

                                                                       
Query: 121 agggctgggaacttccctgtggctcccttccttagctttagcttttggggtacctctttt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 299 agggctgggaacttccctgtggctcccttccttagctttagcttttggggaacctctttt 240

                                                                       
Query: 181 actacaactcgctggccatttcagaccccaaggtttatt-------ggggtagactcccc 233
           |||||||||||||||||| ||||||||||||||||||||       ||||||||||||||
Sbjct: 239 actacaactcgctggccagttcagaccccaaggtttatttattattggggtagactcccc 180

               
Query: 234 ttgt 237
           ||||
Sbjct: 179 ttgt 176


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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