BAC Information

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BAC

Clone NameMSMg01-331A03
Chromosome11 (Build37)
Map Location 4,077,641 - 4,078,207
singlet/doubletsinglet
Overlap geneSf3a1
Upstream geneSfi1, Eif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik
Downstream geneTbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331A03.T7 (MSMg01no331_a03.b1)MSMg01-331A03.TJ (MSMg01no331_a03.g1)
ACCAG447416AG447417
length808713
length of high quality
(start - end)
150 (50 - 199)566 (73 - 638)
definitionCHROMAT_FILE: MSMg01no331_a03.b1 PHD_FILE: MSMg01no331_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:50 2005CHROMAT_FILE: MSMg01no331_a03.g1 PHD_FILE: MSMg01no331_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCACTATATTCCGTAGGTCGGCGGAATTCTCAATTGCTTTTCACATC
TCTATAAATCAGGTTGTAGGCAAGCCTTTAAGGCTTGAGTTTCTGCCCTG
ACTTCCTTTGATGCTGAACAGTGCTATAGAAGTGTAAGCCAAATAAGCTC
TCTTCTCCATCTTTCAGGAAAGGCAGGAGCTAATACAGAGGCTATGGAGT
GGTGCTGGTTACTTGTTGGGAGTTATTAAGACAACTCTTGATCTCTGAAT
TGGGCCTCTCCCCCCGAGAAGAAAAGGTGGTCAAAAGCGGGCCACCGACG
CATCGATTCCGAGAACATCCACTGGATGTTCCAGCCTTAAATTATCGTTG
ATGTCCTGACCACACCCAGTATACTATCAAGTTTTTTTCTTTCCTCCGCG
CCACCTGTTAAAATGAAAGAAATTACTATTGACCCTTTTCTCCCACCGCA
ATAGCCACTTTCTCTTCTTTTGTTTTGCCATTGGTCCCTTTCTTCCCTCT
GTTGCATATTTTTATCATGTATTATACCCCCATTTCGCTATGAAATCGTT
TCACTCTCTTTGTTTCCCTCTTCTTCACCCAAATTCGCAACGCCCCGTAT
GTTTGCTCTTTTAAGCGTTTCCCTGTTCCTAGGTATACTTATACATAACA
CATTTTCTTTACCAATCGTCCAAACAATTATTCTACTTTTTCTGCTTTTT
TTCTTTCTTTCCTTATCATCTCCTATTTCCTCCCTTTTCCCACCCTTTAC
TCTCTTCATATTCGATAACTGTATACAATCACATTACGACTTCGACCCGT
TTTTTTTT
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTCCTCAGGCATGAGACTGTCCTCGGTC
TTTAGTTTCTTGGATGGAGGCTCATCCTCCATAGGAGGTGGGGGGTGTAC
AGGAGGCATTGGAGCTGGGGCTGGGACTGGAGCCACAGGTGGGGCAGGCA
CAAAGGCTGCAAGGACAAGGAACAGTTGCCTAGTGAGTACAGAAGAGGTG
AAGAGGCCCAAGAGGCAGGACTAGGGAGATTTTGCTGGGTGATTTCGAGG
CTTTGCTCTGTAAGAGGTGTGAAGTGCCATGCCTTGATGAGTCTGTCACT
CAGCACATTCCCTGGCAGGGAGCCTTGGGAGGCTGCCCGAATTAGGCAGC
AGGAAAGGGGAGGCAGTGCAAGGTCAGCCAAAAAATAGTTATGTCAGGCT
TCTGGACCTGTCAAGGACCCGACCACCAAATGTAGACACACTAGCTATGC
CATCTCAGTCTCTTGTCTCTCACAAGAAATATGGCTCCCAGGTCTCAGTT
GAGACTTCCTCTGGGATGGATACTCAGTGGGAACAGCCATCATTAAGGCC
AACCACAGCTTTATGGACTAACCCATGAGATGAGAAAGCAACACTACCCA
CCGACCTGTTGGCACAATCATGGGAGGTGGGCGGCGCGCCATGATGGGAG
GTGCTGCAGGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_a03.g1 MSMg01no331_a03.g1 CHROMAT_FILE:
MSMg01no331_a03.g1 PHD_FILE: MSMg01no331_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:51 2005
         (566 letters)



>mm_chr11_4077441_4078407
          Length = 967

 Score = 1065 bits (551), Expect = 0.0
 Identities = 563/567 (99%), Gaps = 1/567 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcctcaggcatgagactgtcctcggtctttagtttcttggatggaggctcatcctccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 ttcctcaggcatgagactgtcctcggtctttagtttcttggatggaggctcatcctccat 708

                                                                       
Query: 61  aggaggtggggggtgtacaggaggcattggagctggggctgggactggagccacaggtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 aggaggtggggggtgtacaggaggcattggagctggggctgggactggagccacaggtgg 648

                                                                       
Query: 121 ggcaggcacaaaggctgcaaggacaaggaacagttgcctagtgagtacagaagaggtgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 ggcaggcacaaaggctgcaaggacaaggaacagttgcctagtgagtacagaagaggtgaa 588

                                                                       
Query: 181 gaggcccaagaggcaggactagggagattttgctgggtgatttcgaggctttgctctgta 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 587 gaggcccaagaggcaggactagggagattttgccgggtgatttcgaggctttgctctgta 528

                                                                       
Query: 241 agaggtgtgaagtgccatgccttgatgagtctgtcactcagcacattccctggcagggag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 agaggtgtgaagtgccatgccttgatgagtctgtcactcagcacattccctggcagggag 468

                                                                       
Query: 301 ccttgggaggctgcccgaattaggcagcaggaaaggggaggcagtgcaaggtcagccaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ccttgggaggctgcccgaattaggcagcaggaaaggggaggcagtgcaaggtcagccaaa 408

                                                                       
Query: 361 aaatagtta-tgtcaggcttctggacctgtcaaggacccgaccaccaaatgtagacacac 419
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 aaatagttattgtcaggcttctggacctgtcaaggacccgaccaccaaatgtagacacac 348

                                                                       
Query: 420 tagctatgccatctcagtctcttgtctctcacaagaaatatggctcccaggtctcagttg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 347 tagctatgccatctcagtctcttgtctctcacaagaaatatggctcccaggtcccagttg 288

                                                                       
Query: 480 agacttcctctgggatggatactcagtgggaacagccatcattaaggccaaccacagctt 539
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 287 agacttcctctgggatggatactcagtgggaacagccatcattaaggctaaccacagctt 228

                                      
Query: 540 tatggactaacccatgagatgagaaag 566
           |||||||||||||||||||||||||||
Sbjct: 227 tatggactaacccatgagatgagaaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 967
Length adjustment: 10
Effective length of query: 556
Effective length of database: 957
Effective search space:   532092
Effective search space used:   532092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)