Query= MSMg01no331_c24.b1 MSMg01no331_c24.b1 CHROMAT_FILE:
MSMg01no331_c24.b1 PHD_FILE: MSMg01no331_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:03 2005
(581 letters)
>mm_chr11_64928892_64929872
Length = 981
Score = 895 bits (463), Expect = 0.0
Identities = 496/511 (97%), Gaps = 8/511 (1%)
Strand = Plus / Minus
Query: 72 atacgtcatcccgtacaccacaggcttctgattatgttggtcaccatacataaaatatcg 131
|||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 981 atacgtcatc-------ccacaggcttctgattatgttggtcaccatacataaaagatca 929
Query: 132 ctatgctctcccaactccagacatctggtatttgtgtgagacagtttcactgtgtagccc 191
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 928 ctatgctctcccaactccagacatctggtatttgtgtgaggcagtttcactgtgtagccc 869
Query: 192 aggctagcctagaattcaccatgtagaccaagctgtcctcaaacttgtagacattc-ttt 250
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 868 aggatagcctagaattcaccatgtagaccaagctgtcctcaaacttgtagacattctttt 809
Query: 251 gcctctgcttctcttgagagctaggatgattgataggactctacccaccatgctacacag 310
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 808 gcctctgcttctcttgagagctaggatgattgataggactctacccaccatgctacacgg 749
Query: 311 catcagtcctcctggtgtgcttaggagtagagagtgtttactccattcatacagtcctca 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 catcagtcctcctggtgtgcttaggagtagagagtgtttactccattcatacagtcctca 689
Query: 371 cctttcagcgactcgttgtgaaaatagctttgcatgaataaacacgtgtctgggacgggg 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 cctttcagcgactcgttgtgaaaatagctttgcatgaataaacacgtgtctgggacgggg 629
Query: 431 catctgatgacccactttcttctgtcattgctgctatttaaaggcaattatgtcaaagct 490
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 628 catctgatgacccacttttttctgtcattgctgctgtttaaaggcaattatgtcaaagct 569
Query: 491 ttccttgcctccagatctcccagcctcatcctacctccagtgctttttcgtgtctcctgt 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ttccttgcctccagatctcccagcctcatcctacctccagtgctttttcgtgtctcctgt 509
Query: 551 ggtctgcttggattcagctgtctttcccagg 581
|||||||||||||||||||||||||||||||
Sbjct: 508 ggtctgcttggattcagctgtctttcccagg 478
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no331_c24.g1 MSMg01no331_c24.g1 CHROMAT_FILE:
MSMg01no331_c24.g1 PHD_FILE: MSMg01no331_c24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:03 2005
(581 letters)
>mm_chr11_64760686_64761666
Length = 981
Score = 1077 bits (557), Expect = 0.0
Identities = 573/581 (98%), Gaps = 6/581 (1%)
Strand = Plus / Plus
Query: 1 cagaacctcatgggacaaccagtctggcatattcaatggaaaaccaacaaagagatcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaacctcatgggacaaccagtctggcatattcaatggaaaaccaacaaagagatcctg 260
Query: 61 actccgatgaggtgaatggtgaggaacaacccataaggttgtcttctaaccagcttgagc 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actcccatgaggtgaatggtgaggaacaacccataaggttgtcttctaaccagcttgagc 320
Query: 121 caggaagaagtatgacaatagagagtagatcagtggctgccagtgataaggttgagagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggaagaagtatgacaatagagagtagatcagtggctgccagtgataaggttgagagga 380
Query: 181 caggggacagggaggacagaatgcctctcccatatcacagaaaataggttctatatatca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggggacagggaggacagaatgcctctcccatatcacagaaaataggttctatatatca 440
Query: 241 caccacttttaagatttgtttcttaacacaatacctttcaacctcaaggtcatcttcatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caccacttttaagatttgtttcttaacacaatacctttcaacctcaaggtcatcttcatc 500
Query: 301 aacaacaacaaaaaacaaaaacaaacaaacaaacaaaaaatgtgagtctgaatttctgcc 360
||||| || |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 aacaataa---aaaacaaaaacaaacaaacaaa---aaaatgtgagtctgaatttctgcc 554
Query: 361 tagccttaggggaggcaaaatacagaagcatctggctgcatttcttccttgccgctggtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tagccttaggggaggcaaaatacagaagcatctggctgcatttcttccttgccgctggtg 614
Query: 421 tgccagctacatgaacacaccactcagggaaagtgagacacagtctaggataggaggccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tgccagctacatgaacacaccactcagggaaagtgagacacagtctaggataggaggccc 674
Query: 481 agcccatgtgagaaacagcaggagctgggatgtaggctgtggttctcaaactcctgtata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 agcccatgtgagaaacagcaggagctgggatgtaggctgtggttctcaaactcctgtata 734
Query: 541 cccaaatgttgctgggaaccacaaggagtttgagaactggg 581
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 cccaaatgttgctgggaaccacaaggagtttgagaactggg 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space: 554441
Effective search space used: 554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
