BAC Information

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BAC

Clone NameMSMg01-331E21
Chromosome11 (Build37)
Map Location 86,309,896 - 86,310,237
singlet/doubletsinglet
Overlap gene0610013E23Rik
Upstream geneBcas3, Tbx2, Tbx4, LOC668751, Brip1, LOC668803, Ints2, Thrap1
Downstream geneRps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc, Dhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e, Rad51c, Tex14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331E21.T7 (MSMg01no331_e21.b1)MSMg01-331E21.TJ (MSMg01no331_e21.g1)
ACCAG447633AG447634
length742746
length of high quality
(start - end)
342 (75 - 416)242 (67 - 308)
definitionCHROMAT_FILE: MSMg01no331_e21.b1 PHD_FILE: MSMg01no331_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:11 2005CHROMAT_FILE: MSMg01no331_e21.g1 PHD_FILE: MSMg01no331_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCGACCTCCGCGGA
ATTCAGCCAGGATACCAAGAACACTAAGCAGGCACTCCACCACAGCCTTG
AGTGCAAGCTTTCATATCTCAACAGGTGGTGATTGTAAAACTTGTGAGCT
ACATCCCCAGCCCACATTCAAATCACTTTCATTGTTATTTCAAGCTATTA
CATGGTACTACACAAAACACAAGACAGCTAGTGGCAAGGAGCACATAACA
GGTCCACCAGGTGAATGAATCTAAATCATTTATTCTCACTGATTACTAGT
CATATTATAGAGCATAATACAGTATTAAAATATATCATCCTCAGTAAATC
TTCACTTAGAAAATGTGATTGTTATAGGTAAAATATAGCATTTAGAACTT
TCATTTAAAAATACAACCCCCACGAAAAATTTAAGCATTTTTAGAATGGG
AATTATAAAAATCTGTAAATTGTTTCAGATACTATATATCTTAAAATACT
ATGCAAAATCTTTATTCTGAAAACCTGTCAGGAAACATTACCTGAACCCC
TTTAAAATGGCTAGTTCTATTTCTAATTGCTATTTTGGTATTATTGATAA
GAAATCACATTTCCAATTTAACACTGCAATTATTTGTCAAATAAGTGGAA
TAAATGTTGCATATTTATTAACGTGAATGAATACATAGCCTACAAATGCA
TGGCTCTTGCACTTATACTTCTGAGAAACTGAACTATATATT
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTATCTAAATTTAATATAAGTGTAAATTTTCATTATTGG
TTCTCATTCCTCACCTCCTCCGTTTCCTTTATAAAAACTGTACTTGGTGG
CCAGGCAGTGGTGGCTGCACGCCTTTAATCCCACCACTTGGGAGGCAGAG
GCAGGAGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCC
AGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACAAAAACGA
AAACAAAAAAACATTTTTTTTTTTCAAAAAACCCTTTACTTGGTAACTTT
CCAGTAAGACTGTGTGTGCGACCGCACGTGTACTAGAACATGTGCTCATG
TGTGTTCACACAGCCCCCCCCCCCAATCTTCAACATATACTATAGAGTCT
CTAATCGTGCTACCCATGCCGATAAAGTTCTTAATGAGGGCCAACTGTCC
CATCTCTCAACATATCCCTTTTAGGTAAGTGGACGGTCATCCCCCCAAAT
TCACTTACTCCCCATTAATTAATGATTATTTTGCCCCGTGCCACAGTCCG
CCACACCACAAAGTTACTAACTCCGTTTACTGCATCATTCAACCCCTCCA
CATCCCCGTTCTACGCCCTTTACAAATTGCGTCTCTAGAGTAATGTCATC
ATATCCATTTAACCCCTCTTTCTCATTCCTATTCAGCACTTTATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_e21.b1 MSMg01no331_e21.b1 CHROMAT_FILE:
MSMg01no331_e21.b1 PHD_FILE: MSMg01no331_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:11 2005
         (342 letters)



>mm_chr11_86309696_86310437
          Length = 742

 Score =  646 bits (334), Expect = 0.0
 Identities = 340/342 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagcaggcactccaccacagccttgagtgcaagctttcatatctcaacaggtggtgatt 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 542 taagcaggcactccaccacagccttgggtgcaagctttcatatctcaacaggtggtgatt 483

                                                                       
Query: 61  gtaaaacttgtgagctacatccccagcccacattcaaatcactttcattgttatttcaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gtaaaacttgtgagctacatccccagcccacattcaaatcactttcattgttatttcaag 423

                                                                       
Query: 121 ctattacatggtactacacaaaacacaagacagctagtggcaaggagcacataacaggtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 422 ctattacatggtactacacaaaacacaagacagctagtggcaaggagtacataacaggtc 363

                                                                       
Query: 181 caccaggtgaatgaatctaaatcatttattctcactgattactagtcatattatagagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 caccaggtgaatgaatctaaatcatttattctcactgattactagtcatattatagagca 303

                                                                       
Query: 241 taatacagtattaaaatatatcatcctcagtaaatcttcacttagaaaatgtgattgtta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 taatacagtattaaaatatatcatcctcagtaaatcttcacttagaaaatgtgattgtta 243

                                                     
Query: 301 taggtaaaatatagcatttagaactttcatttaaaaatacaa 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 taggtaaaatatagcatttagaactttcatttaaaaatacaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)