Query= MSMg01no331_k24.b1 MSMg01no331_k24.b1 CHROMAT_FILE:
MSMg01no331_k24.b1 PHD_FILE: MSMg01no331_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:37 2005
(664 letters)
>mm_chr11_21118682_21119746
Length = 1065
Score = 1207 bits (624), Expect = 0.0
Identities = 654/664 (98%), Gaps = 3/664 (0%)
Strand = Plus / Plus
Query: 2 gaattccaggaccttctgactacacagagaaactatgtntttgaaaacaaaaaacaaaaa 61
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 203 gaattccaggaccttcagactacacagagaaactatgt-tttgaaaacaaaaaacaaaaa 261
Query: 62 acaaaacaaaagcaaaagaaaagaaagaagagagtattattttgatgcttttacaatata 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 acaaaacaaaagcaaaagaaaagaaagaagagagtattattttgatgcttttacaatata 321
Query: 122 tacaattctgtggctctctaagtaatatgcctcagaagattttaatgctaacaagtttaa 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tacaattctgtggctctctaagtaatatgcctcagaagattttaatgctaacaagtttaa 381
Query: 182 gaattaagcacat-ggggggggggaaaggggggaggctcagaggttaagagcacaggctg 240
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 382 gaattaagcacattggggggggggaa-ggggggaggctcagaggttaagagcacaggctg 440
Query: 241 ttctttcagagaacccaggttcaattcctaccactcacatatcagctcacaattgtctat 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 ttctttcagagaacccaggttcaattcctaccactcacatagcagctcacaattgtctat 500
Query: 301 aactccagttccaggggctccaatactgtcacacagacagacatacagacatgtaggcaa 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 aactccagttccaggggctccaacactgtcacacagacagacatacagacatgtaggcaa 560
Query: 361 aacattgatgcacataacacaaataagcttgttttaaattaagcaaatcttaaaatgtaa 420
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacattgatgcacataaaataaataagcttgttttaaattaagcaaatcttaaaatgtaa 620
Query: 421 ataaagtttaaaaatataaactgatgggtgtatttttcatcttaaataatttccttctgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataaagtttaaaaatataaactgatgggtgtatttttcatcttaaataatttccttctgt 680
Query: 481 aagtgaaattgtaaggtggttttgtgatgtgcacatgtagatttagagattacagaggag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagtgaaattgtaaggtggttttgtgatgtgcacatgtagatttagagattacagaggag 740
Query: 541 tgctaatctaatatcatgacactcaaggttgcagacatcctggttctgagcgaacacagt 600
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgctaatctaatatcatgacacttaaggttgcagacatcctggttctgagcgaacacagt 800
Query: 601 tcttttgttgcttctgacaacattatttctcaggcaactgtgactgtcacagctgtgttg 660
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tcttttgttgtttctgacaacattatttctcaggcaactgtgactgtcacagctgtgttg 860
Query: 661 agat 664
||||
Sbjct: 861 agat 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1065
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1055
Effective search space: 689970
Effective search space used: 689970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no331_k24.g1 MSMg01no331_k24.g1 CHROMAT_FILE:
MSMg01no331_k24.g1 PHD_FILE: MSMg01no331_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:37 2005
(658 letters)
>mm_chr11_21269478_21270535
Length = 1058
Score = 1253 bits (648), Expect = 0.0
Identities = 654/656 (99%)
Strand = Plus / Minus
Query: 3 ctttaagtagttaaacatcggaggagaaagaacacttcggttgcagggaagggagagaga 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 ctttaagtagttaaacatcggaggagaaagaacacttcggttgcagggaagggagagaga 799
Query: 63 ccttccttacaacgtagattctagaaattgaaaattataagccagattattttaataaga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ccttccttacaacgtagattctagaaattgaaaattataagccagattattttaataaga 739
Query: 123 tcctaaaatgtcgagatttgtacaaggtaagacattttgctttctgtctcttggctgctt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tcctaaaatgtcgagatttgtacaaggtaagacattttgctttctgtctcttggctgctt 679
Query: 183 cgtccgattttgaatattggtagtctctaagtaagtgggtagtttgtaactggaagtgtt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 cgtccgattttgaatattggtagtctctaagtaagtgggtagtttgtaactggaagtgtt 619
Query: 243 catttgtgataccgtttgccagacctttttggttaaattggtatttaagctgctttgcgc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 catttgtgataccgtttgccagacctttttggttaaattggtatttaagctgctttgcgc 559
Query: 303 cacttattgggttggcatttcatatacgtgtttgtatgcctctgcgccccgcaggggtta 362
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 558 cacttattgggttggcatttcatatacgtgtttgtatgcctctgcgccctgcaggggtta 499
Query: 363 tttctaccttctaaaatcagttttaatagtattctgacatcgtggatagtaattgtaaaa 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tttctaccttctaaaatcagttttaatagtattctgacatcgtggatagtaattgtaaaa 439
Query: 423 atcaaaacaggatttttgactgctgattaattcttgttcccttcttgcactcgatgataa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 atcaaaacaggatttttgactgctgattaattcttgttcccttcttgcactcgatgataa 379
Query: 483 gttagttatctttgtgggacaaggaaacccagagggctagggacaggcagatgcgtttgt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gttagttatctttgtgggacaaggaaacccagagggctagggacaggcagatgcgtttgt 319
Query: 543 caagactagtaggaagctctccacttcttttctgtgtgtacgtggattgagtctcagagt 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 caagactagtaggaagctctccacttcttttctgtgtgtacgtggattgagtctcagagt 259
Query: 603 catttattgcgaaatcagtagtttgtagacactggaggtcataccagtcagagaaa 658
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aatttattgcgaaatcagtagtttgtagacactggaggtcataccagtcagagaaa 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
