Query= MSMg01no331_m03.b1 MSMg01no331_m03.b1 CHROMAT_FILE:
MSMg01no331_m03.b1 PHD_FILE: MSMg01no331_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:42 2005
(252 letters)
>mm_chr11_65810390_65811041
Length = 652
Score = 478 bits (247), Expect = e-139
Identities = 250/251 (99%)
Strand = Plus / Minus
Query: 1 tgaaagcacagtgaaactgtgaatcccaccttcagacaacagaaaagtcatcccataaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tgaaagcacagtgaaactgtgaatcccaccttcagacaacagaaaagtcatcccataaat 283
Query: 61 tatgaagcatagcacagccacgcaaccattaaaatcatgctttaatcaaatctttattat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tatgaagcatagcacagccacgcaaccattaaaatcatgctttaatcaaatctttattat 223
Query: 121 cagatggagaaatttgccatggaaccagacatgatggctcacattttcaatcccagccct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 cagatggagaaatttgccatggaaccagacatgatggctcacattttcaatcccagccct 163
Query: 181 ccagaagttgaggcaggaggctttttagtttaaggcaatcctgcattttatactgagatt 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 162 ccagaagttgaggcaggaggctttttagtttaaggcaaacctgcattttatactgagatt 103
Query: 241 ctgttgccaaa 251
|||||||||||
Sbjct: 102 ctgttgccaaa 92
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 652
Length adjustment: 9
Effective length of query: 243
Effective length of database: 643
Effective search space: 156249
Effective search space used: 156249
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no331_m03.g1 MSMg01no331_m03.g1 CHROMAT_FILE:
MSMg01no331_m03.g1 PHD_FILE: MSMg01no331_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:42 2005
(349 letters)
>mm_chr11_65657868_65658612
Length = 745
Score = 632 bits (327), Expect = 0.0
Identities = 342/349 (97%), Gaps = 4/349 (1%)
Strand = Plus / Plus
Query: 1 agtactccaccactgatctacaggtctgtccccatgcatcctttattattgatttactta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtactccaccactgatctacaggtctgtccccatgcatcctttattattgatttactta 260
Query: 61 ttgagacagggtcccactttgtacattggctggcctggaacttgctatgtagactaggtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgagacagggtcccactttgtacattggctggcctggaacttgctatgtagactaggtt 320
Query: 121 ggctttgaacttactaagatctgcctacctctgcctccccagcactggaactaaaggtat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctttgaacttactaagatctgcctacctctgcctccccagcactggaactaaaggtat 380
Query: 181 gtgccattgtgactggcttccctataaatgtggataaagtcctctgttgctacttacaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgccattgtgactggcttccctataaatgtggataaagtcctctgttgctacttacaga 440
Query: 241 attgctttctttatttaaagtgtgtattatttcgctctttcgatgtacctcatttattgt 300
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 attgcttt----atttaaagtgtgtattatttcgctcttttgatgtacctcatttattgt 496
Query: 301 cttattggtaattgttttgttcaccatttctacaccataaaaattctgc 349
||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 497 tttattggtaattgttttgttcaccattcctacaccataaaaattctgc 545
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 745
Length adjustment: 9
Effective length of query: 340
Effective length of database: 736
Effective search space: 250240
Effective search space used: 250240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
