BAC Information

Click to search

BAC

Clone NameMSMg01-331N03
Chromosome11 (Build37)
Map Location 103,463,760 - 103,464,397
singlet/doubletsinglet
Overlap geneGm884
Upstream geneFzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a
Downstream geneLyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf, EG667631, Arf2, LOC100042645, Crhr1, 4933407P14Rik, Mapt, 1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331N03.T7 (MSMg01no331_n03.b1)MSMg01-331N03.TJ (MSMg01no331_n03.g1)
ACCAG448019AG448020
length714715
length of high quality
(start - end)
642 (73 - 714)341 (78 - 418)
definitionCHROMAT_FILE: MSMg01no331_n03.b1 PHD_FILE: MSMg01no331_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:47 2005CHROMAT_FILE: MSMg01no331_n03.g1 PHD_FILE: MSMg01no331_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:47 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAAGAGAGACCGCG
GAATTCCTCTTCTCTCCCTTGGCAACTTGCCTTTGGAAAAGATGCAAGAA
GCTTGTGTCCCACCAGAGTCCATACCTGCTGCCAGAACCTCTGAGGCCAT
GCAGGATGCCAGAACCCCAGCCACATCTCTGGTGGAAGGCCTCTGCTCCA
ACAAAGGCTACCTGGGTATCAGAAGTCTAGCCATCAACTTGGGTAAAGAC
CCTCTATTCAACTACAGGCCACCCTGACCAGAAGACCAGAAAGGAAACAG
AAACCAAGGAACAAAACACCCGTCCAACAAAGACGAACACAGAAACCAGC
ACCTAGACCTATAACCACCCTAAATGCAGATGCCTAGACACCAGTGTGAG
AACACAGCCACAGCAAAAGCAATATGCCACCACCAGAACCCAGCTATCCT
ACTACAGCAAGCCCTGGATATTCCAGCACAGCTGAAGCACAAGAAAATGA
CCTTAAGCTGAACTTTATGAAGGCGAGCGAGTCCTTAAAAAGAAAATTAA
TAAATCCCTTAAAGAAATCAAGGAAAAGAATCAAAAATAGGAGGAAATGA
GTAATAACCCTTAAAGAAAACCAGATAAGTTGAGGATACCACAAGAACAC
AGCCCACAGAATCAACTAAGCAGGGATTTCAGAGACTGAAATGACAGTCA
CAGATCCTGTGTGG
CCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGAGGCTGGGGAGGGAAGATGGC
TTATCTAATTGTTGAGCTCATTCCTCAGAACCCATGGGAAAAGGTTGGGT
GTGGTGGTGTGCCTGTAATCCCAGAGCTAGGGAGGCAGAAGCAGGGAAAT
CCTTGAGGCTCACTAGCCAACCAACCTAGACGAATCAGGGAACCTAATGT
CTCAGTGAGAGACTATATTTCCAAAGCTAAACAGAGTGCCCAAGATATGA
AACCATAGGTTGTATTCTGGCTCCATGCTCAAATGCACACATGAATAAGC
TACCCCCTTCCCACAAATGCATACATAGCTTCTCCCCAACACACACACAC
ACACACACACACACACATACACACACACACACACACACACACACACACAC
ACGAACACACACACGGTGAAGATCAGATGCCAAGGAGAAAAGGGAACACC
GGAGGATGAGGTCACGGGTAGTGGGCAGTGACCTTATAGGTCATTGTCTA
TCTACCAATTAAGAGCATAGAGGCCCAATGATCGACCAAGGCTAGCCCTA
CTTGGCCCAAGGGCAGTTAAAACCTTGTATGGCCACACTTCACCATCCTA
ACTCGAGGTGTACCTGACCAGTTGCAGGAAAGCTCCTGTGATCGATGCCA
TATCTCAGTCGGAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_n03.b1 MSMg01no331_n03.b1 CHROMAT_FILE:
MSMg01no331_n03.b1 PHD_FILE: MSMg01no331_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:47 2005
         (642 letters)



>mm_chr11_103463560_103464597
          Length = 1038

 Score = 1052 bits (544), Expect = 0.0
 Identities = 616/642 (95%), Gaps = 4/642 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caacttgcctttggaaaagatgcaagaagcttgtgtcccaccagagtccatacctgctgc 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 caacttgcctttggaaaagatgcaagaagcttgtatcccaccagagtccatacctgctgc 260

                                                                       
Query: 61  cagaacctctgaggccatgcaggatgccagaaccccagccacatctctggtggaaggcct 120
           ||||||||||||||||||||||||||||||||||    ||||| ||||||| || |||||
Sbjct: 261 cagaacctctgaggccatgcaggatgccagaacc----ccacaactctggtagagggcct 316

                                                                       
Query: 121 ctgctccaacaaaggctacctgggtatcagaagtctagccatcaacttgggtaaagaccc 180
           ||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||| ||||
Sbjct: 317 ctgctccaacaaaggctacctgggtatcagaagtccagccaccaacttgggcaaaaaccc 376

                                                                       
Query: 181 tctattcaactacaggccaccctgaccagaagaccagaaaggaaacagaaaccaaggaac 240
           |||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 377 tctattcaactataggccaccctggccaaaagaccagaaaggaaacagaaaccaaggaac 436

                                                                       
Query: 241 aaaacacccgtccaacaaagacgaacacagaaaccagcacctagacctataaccacccta 300
           ||||||||| | |||||||||| |||||||||| ||||||||||| |||||| |||||||
Sbjct: 437 aaaacacccattcaacaaagacaaacacagaaatcagcacctagatctataatcacccta 496

                                                                       
Query: 301 aatgcagatgcctagacaccagtgtgagaacacagccacagcaaaagcaatatgccacca 360
           ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 497 aatccagatgcctagacaccagtgtaagaacacagccacagcaaaagcaatatgccacca 556

                                                                       
Query: 361 ccagaacccagctatcctactacagcaagccctggatattccagcacagctgaagcacaa 420
           ||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 557 ccagaacccagttatcctactatagcaagtcctggatattccagcacagctgaagcacaa 616

                                                                       
Query: 421 gaaaatgaccttaagctgaactttatgaaggcgagcgagtccttaaaaagaaaattaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gaaaatgaccttaagctgaactttatgaaggcgagcgagtccttaaaaagaaaattaata 676

                                                                       
Query: 481 aatcccttaaagaaatcaaggaaaagaatcaaaaataggaggaaatgagtaataaccctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aatcccttaaagaaatcaaggaaaagaatcaaaaataggaggaaatgagtaataaccctt 736

                                                                       
Query: 541 aaagaaaaccagataagttgaggataccacaagaacacagcccacagaatcaactaagca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aaagaaaaccagataagttgaggataccacaagaacacagcccacagaatcaactaagca 796

                                                     
Query: 601 gggatttcagagactgaaatgacagtcacagatcctgtgtgg 642
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 gggatttcagagactgaaatgacagtcacagatcctgtgtgg 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1038
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1028
Effective search space:   649696
Effective search space used:   649696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)