BAC Information

Click to search

BAC

Clone NameMSMg01-332I10
Chromosome11 (Build37)
Map Location 55,496,840 - 55,497,108
singlet/doubletsinglet
Overlap genenone
Upstream geneRapgef6, Cdc42se2, LOC677786, LOC100041463, Lyrm7, Hint1, Gpx3, Tnip1, LOC667826, Anxa6, Ccdc69, Gm2a, LOC667832, Slc36a3, Slc36a2, Slc36a1, Fat2, Sparc, Atox1, G3bp, Glra1
Downstream geneNmur2, LOC100040816, LOC624168
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332I10.T7 (MSMg01no332_i10.b1)MSMg01-332I10.TJ (MSMg01no332_i10.g1)
ACCAG448535AG448536
length1,3331,338
length of high quality
(start - end)
39 (339 - 377)279 (137 - 415)
definitionCHROMAT_FILE: MSMg01no332_i10.b1 PHD_FILE: MSMg01no332_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:03 2005CHROMAT_FILE: MSMg01no332_i10.g1 PHD_FILE: MSMg01no332_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCCCCCNNNNNNCCCGGCCTCGTGNNNNCCAATGGGCGCTAAGACTCCT
AAGGGAGAGGACCGCGGAATTCTCTGGCCCATAAGGCCCTTCACTAGCCC
CCAGANNGAAANGNNNAAAGGNAAGNATGCTTTAATGTTTTGGAGGNNNA
NTGAGNNAGGNTTGGTNTTNANTAGAATNNAGTTAGAATGAAANTGGNNT
TTTTANANAGAAGGGGTGGTNTGGGGGNTNTNAGGANAGAAGNTAANATG
TTNNTAAGTNTATGGTTTGTGGGNNTGTTTTGTNAANANNNTGGNTTTGG
GGTGGAGNTGAAGGGNNANAGNTGAGGNTGGATNTGTNTAGTTTTGGGGG
TTTTTGTTTTGTGGTAAGGGGGAGNAGGNTGTNTAGATGGTTTNTTTTGT
AATNNNTTTNNNTNTTNNTTTTTTAAATNTGGGGTGAAAGTGAAGAGTTA
NTGGANATNNNTTNTTTANTGGANNGTTGGTNAGTATTTNAATNNNAGGN
AGNTNTTATTGGAAGAATTTTTNTTNNNNTNTNAAAAANNTGGTTGAGAN
AGAAAAGTAGNTGAGTAGNTGGGAATAAANNATTTAANTGGTTAANNGGT
GGGTGAGAANATNAGATAGTAAANGGTTGAAAAGGANNTAGTNTTTAGNA
TTTGAGNTNAGTGGTGTGGNNAGAAANNNNTGAGTTGTNNNTGAGATGGT
NTTAGNANNATTGGTGGNTATTGTNANTGGATNTNTGGNTGAATTATTNA
NAGGNGNANNANGTNTNANNNTGGTNAATTTNAAATTNAGNNNTTAAAGA
AGAAGATGNTTATNTNGGAATNNGGNGNNTTTNGTTGTTTTTTNTTNTGA
GTGGAGTAAAAGGAAGTTTAGNTGTTGAAAAGTTTTAGGAAAGGGAGTTT
TATNNTAAAATTTTAATNTAAGAAAAAGGTTTTGGGAAAAGGAATTTTTG
GATTTTTAGGAAAAAAGTAAAGAAAATTTTNATTTGGAGGGGTTAAAAAA
GGAATTTTGAAAATTTATTAAAAATTAAAGGTTTTTTTTTTGTTTTTGAA
TAAAAAAAAAAAGGGGAATGTTTTAGNNTNGGGNNTTTGGNTTTGGGGGG
TTGGAGAAAAAAAAATGAAAAGGGTAAGGGAGGATTTGGTTAAAAAAAAA
TGAAAATTGAATAAGAGGGGGAAAGGTTTGGAAAAAATTGTTTTTTGTAA
AGGGTAAAANNATAAAGAAAGGGGGGAGATGGTAGGGGGGTTAAAAAATA
GGTTNATGGGNAAANTATNNNATNATATTGTTTGAAAANTTNTATGTTTT
TTAAAATTGTGAAGAGGTGGAAAAAAAGAAAAA
CCCGCTCTTTTNNAAACACAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCTAAGGCCCCAACCCATC
TAATAAAGCCAGGTGCAGTAGCTTTTACTTGTCACTGTCAGTGCCAAGAG
ATGGAGATAGAAATGGAAAGATGGCTGGAGCTTACTGGACAGATACCCTA
TCAGTATTGGGAAGGCGCAGGCCAATGAAAAACCTTGTTCCAAAACAAAA
CAAAAAAAACCAAAAAAGCAAAAAAACAAAAAAATAGGTAGGTATGGGAT
GGCAGCCAAGTTGTCCTCTGGTTTCTCTCTCTTTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCC
CTCCCTCCCTCCCTCTATTTTTCCCTCTCTTCCCCCCCAACCCCATTCCA
TTTGGTGTCTTGCCCCCCTCTTCAGAGAACAATTCCACAATCTCTATCAA
TCATGAGGTTCTTCAAGAAATATGCTTATAACTCCGGCCTTCCCTGTGCC
CAGCAAATCTGAATTTTAACACGAGGTCGATGGCCTCCGTGTGATCTACA
ATGTGTGAGCCTGCCCCCTATTTTTGCACTTGGTTCACATTAAGCACTAG
ATGCCCCTCCCCTCTCTCCCTTTGCAACAGAGTATCTTCCTGAAACCCTC
CGTTGTTCTCCATCCCCGCTGCACTGTGATCCTCCAACAACTTTTTTAAT
TACCTCCCTGTCACATCATCATCTTCCCCTACCTTGACTTTATATTTGCC
TTTATATCTCACACACCTTCCTCCTTTTGACTCCCTCCCCAACGGCTCCT
AAGATGTTCTTCTTCTCACCCATCATTCTAACCCTTCAACAACTCCACCC
TCTTTCTTACCCATCAGGATCTGATATTTTAAAACCCCAGTCCTCTCTGC
CCTTCTGTGCCTCTCTATCCCTCCCCCCAAATTCTATTCTCTCCCTTTTT
CTATCCCCCCATTTCCCCCGCTTATGACCTCTCCGCCTCCCTTTTAACTA
TTCCCTTTCCCCCATTCCTTCATTCTTCCTATCTTATTATCTTTCTACAA
CCCTACATCTCCTATCCCTTCCCCTCCATACCATTACCCCTTCCATTGCC
CTACATCCCCCCTCCTCTTTACTTACCCTATTTATCCTTTTTCCTCACTC
CTATACACCACATCTCCCTTCCCTACTCCCTTCTATCCTACTCCATTCCT
CATGTCCTCTATGTCCATTACCCTTATTATTATCTCTTACTTCCTCGCGC
CTCCTATCATCTACCTTTTCTCTACACATTCTCTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_i10.g1 MSMg01no332_i10.g1 CHROMAT_FILE:
MSMg01no332_i10.g1 PHD_FILE: MSMg01no332_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:04 2005
         (279 letters)



>mm_chr11_55496805_55497483
          Length = 679

 Score =  437 bits (226), Expect = e-127
 Identities = 258/270 (95%), Gaps = 4/270 (1%)
 Strand = Plus / Minus

                                                                       
Query: 3   cagtgccaagagatggagatagaaatggaaagatggctggagcttactggacagataccc 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cagtgccaagagatggagatagaaatggaaagatggctggagcttactggacagataccc 245

                                                                       
Query: 63  tatcagtattgggaaggcgcaggccaatgaaaaaccttgttccaaaacaaaaca---aaa 119
           |||||||||||||||| |||||||||||||||||||||||||||||| |||| |   |||
Sbjct: 244 tatcagtattgggaagtcgcaggccaatgaaaaaccttgttccaaaaaaaaaaaaacaaa 185

                                                                       
Query: 120 aaaaccaaaaaagcaaaaaaacaaaaaaataggtaggtatgggatggcagccaagttgtc 179
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 aaaacaaaaaaagcaaaaaaacaaaaaaataggtaggtatgggatggcagccaagttgtc 125

                                                                       
Query: 180 ctctggtttctctctctttctctctctctctctctctctctctctctctctctctctctc 239
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 ctctggtttctctctctctctctctctctctctctctctctctctctctctctctctctc 65

                                         
Query: 240 tctctctctctctctctctctctccctccc 269
           |||||| ||| ||| |||||||||| ||||
Sbjct: 64  tctctccctccctccctctctctcc-tccc 36


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 100
Number of extensions: 36
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)