Query= MSMg01no333_d12.b1 MSMg01no333_d12.b1 CHROMAT_FILE:
MSMg01no333_d12.b1 PHD_FILE: MSMg01no333_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:21 2005
(628 letters)
>mm_chr11_111526797_111527822
Length = 1026
Score = 1071 bits (554), Expect = 0.0
Identities = 608/626 (97%), Gaps = 2/626 (0%)
Strand = Plus / Minus
Query: 3 gaattctctttagtttgcattctattcagttatatttgcctatgaggaagggggtggggg 62
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 826 gaattctctttagtttgtattctattcagctatatttgcctatgaggaagggggtgggag 767
Query: 63 ttcactgccaccatcagaaaacaaatgggtgaaaataaaatttatagttagggatggggg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 766 ttcactgccaccatcagaaaacaaatgggtgaaaataaaatttatagttagggatagggg 707
Query: 123 cttcttgctggggtcacaatctcctcatcttcaacagcaatattgataataacacttcct 182
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 cttcttgctggggtcatgatctcctcatcttcaacagcaatattgataataacacttcct 647
Query: 183 aaagaatcatttcataaatggatatggagagaatgatttcatgtatcctattattctaaa 242
||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||
Sbjct: 646 aaagaatcatttcataaatggatatggagagaatgatgtaatgtaccctattattctaaa 587
Query: 243 acctttatggcttctgtgcttttttttttttcaccagaaacaataaaagtggaaaaggga 302
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 586 accttcatggcttctgtgcttttttttttt-caccagaaacaataaaagtggaaaaggga 528
Query: 303 agactggtggaaaggtataagatgggacaaggcatgcctggaagctggaggaaaggagaa 362
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 527 aaactggtggaaaggtataagctgggacaaggcatgcctggaagctggaggaaaggagaa 468
Query: 363 gggggcaagaaaacataggaacccaaactaagtatgtgtaaaaatgctgtaaggcaccat 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 467 gggggcaagaaaacataggaacccaaactaagtatgtgtaaaaatgctgtaaggtaccat 408
Query: 423 gttacatcatccactaatagaaaaaaatataaattatggaggcctataatctcacaatac 482
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 407 gttacatcatccactaatagacaaaa-tataaattatggaggcctataatctcacaatac 349
Query: 483 cagcttttttaaaatggagggaggaaataggaaaacacatgtgaagtggaaataaaaaat 542
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 cagcttttttaaaacggagggaggaaataggaaaacacatgtgaagtggaaataaaaaat 289
Query: 543 aatactaatggtttttcttatttatttatttattcacgtatgtattttttgtatgagtgc 602
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 288 aatactaatggtttttcttatttatttatttattcacttatgtattttttgtatgagtgc 229
Query: 603 tctgctgcatgtacaccacataccag 628
||||||||||||||||||||||||||
Sbjct: 228 tctgctgcatgtacaccacataccag 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1026
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1016
Effective search space: 627888
Effective search space used: 627888
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no333_d12.g1 MSMg01no333_d12.g1 CHROMAT_FILE:
MSMg01no333_d12.g1 PHD_FILE: MSMg01no333_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:21 2005
(563 letters)
>mm_chr11_111372853_111373815
Length = 963
Score = 957 bits (495), Expect = 0.0
Identities = 540/563 (95%), Gaps = 13/563 (2%)
Strand = Plus / Plus
Query: 1 attaattattctcatttcttgatacagagactctttctttgtagtccaggctggcactta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 attaattattctcatttcttgatacagagactctttctttgtagtccaggctggcactta 273
Query: 61 actccttgtggaattaaagctcatctcaaacgaatgatcctcctgcctcagcctctcgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 274 actccttgtggaattaaagctcatctcaaacgaatgatcctcctgcctcagcctctcatg 333
Query: 121 tgctataacgacaagcagatacaattccctcagtgaacataggttctcactctggttctc 180
| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 334 t-------------gcagatacaattccctcagtgaacacaggttctcactctggttctc 380
Query: 181 tatgttttcttcccaataatttgttttctgggtactgctgaggtcgttgctcccgttatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgttttcttcccaataatttgttttctgggtactgctgaggtcgttgctcccgttatc 440
Query: 241 ttcagagaacgtccaggacacaacgaagtctctgtattgtgtttaatgtccttttcccca 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcagagaacgtccaggacacaatgaagtctctgtattgtgtttaatgtccttttcccca 500
Query: 301 ttattcagtggagtagtacttggaagaagtcagttcaattgcaggccaactctggaactc 360
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 501 ttattcagtggagtagtacttggaagaagtcagttcaattgcaggccgattctggaactc 560
Query: 361 cttagacctttgtgatgtgagccctgtttttttcttttgaagaaactcattgttcctgtg 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttagacccttgtgatgtgagccctgtttttttcttttgaagaaactcattgttcctgtg 620
Query: 421 atcattgctgcagagagagagagagagagagagagagagagggaaagtgagagagagtgg 480
||||||||||||||||||||||||| || || ||||||||| ||||||||||||||||||
Sbjct: 621 atcattgctgcagagagagagagagggaaagtgagagagagagaaagtgagagagagtgg 680
Query: 481 ggaagctttcagccaggatttatttactcttctaagtcttacttgtgataatcaaaccca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggaagctttcagccaggatttatttactcttctaagtcttacttgtgataatcaaaccca 740
Query: 541 atgtaaatcaggatgctggccat 563
|||||||||||||||||||||||
Sbjct: 741 atgtaaatcaggatgctggccat 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
