TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATAACGCG
GAATTCATTTTCTCTTACCAGCATCTACTCTTAGGAAAGTAACAGATGCT
CATTGTAAAAAATGTCGGAAAAAGAACAGTTGAAGGTAGCAAACAAGTTA
CCCGAGCATGTTCAACACTTCTGGGAGTGGATATGCAATCTAGTTCCTGC
CAGCCACCTTTCCACAGACTTCTGCTATGTGTAATGGCCCTGCTAGAGAG
AACACCACGCACATTTGGGAGAAAAGAGTAGGCATGGTTTTGGGTTCAGC
TGTTCTTCCCTTCAGTGTTACAGCACACTTGAACTTCAGTCCTGGGTACC
AACAGCATGAGCATTCCATGGCTGTGGGCAAGCATGTCTTAGAAAACAGC
CTTGCCTTCCCCACAGCCTACTTAGCACAGGTTAGCTCAACATCCACGCA
TCACTGAAACTCAGAGAAGTATCTGTAGTCATTTTGAAGACTGCGGAAAT
GGTGTGATCTTCCCCAAGGGCGCTGGAGGACTGGTGCCCTCTGCAGGGGT
GCTATTTTCCTCACAGAATCCTAAGATACCTTCTCTGGGCACTGAAGCAG
CTGGTAGGAGGAGGAGACAGGTGATCCCTGACTGGCTCTGGCCTGTTTAG
CACATGAATGGAGCTCTCATGANGCACCTGAAGCTTAAGAGTCTCTGTTA
GACATTTTACCCCATTTCTGT

NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAGTGAAGATAGCAGTTGGGTGCTA
ACTCCGGAAAATTCTTAGAAGAGAACCGGTTTGGCCTCAGGCAGGTTGGG
CCTCAGGCAGGTTGGGCCTCAGGCAGGTAGTAGCACATCAAAGGAGCAGC
ACAGCATGGTCACAGCCAGCCTTGCTAGGCTGGAAGGAGGTAACATAACN
TAACCCATCAGGCTGTGGATGACACTGGATGGNATTGGGGCCTTACCGNT
GTNTATTGCNCANTGCCTGCTGCGTTTCCATACGATACAAACCATTTTCT
TATCTAATATCCTGCTTTTTTCTCGTTGTCTTACTTTCCCCCTCTATCAG
TTCTTTCTTCTTTTTTTCTTACTGCTTTTGTCAACCACTCCTTATCATAT
TCTACCATATTACCTTTATCCTTTCCCTTTTTATTATTCACTTCTTTTTA
AATTATATATCCTTTTTCCGTTCTTCTCTGACTTCTTTTCACCCCACTAT
TATCTCACTACTTATCTCTCCTCCCCTACAACTTCTTACTTTTTCCTTAT
CCCTTCATCCCACCCTTTATTCTTATTTCTCTCTCTTCCCTTGCCCTCCT
TCCTCTTCCTATTTCTTCTTCTTTCTTATATTTTCTCGTTTTTCTTACCA
TTATCCCTTATCATTCTTTTATCTTTTTCAGCCTTATTACTTCATTCCCT
AACTAGCATGACATCTTCTACGCACCTTCTTACTTAACACTATCATACCT
AC

Query= MSMg01no333_p24.b1 MSMg01no333_p24.b1 CHROMAT_FILE:
MSMg01no333_p24.b1 PHD_FILE: MSMg01no333_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:17 2005
         (633 letters)



>mm_chr11_20204838_20205871
          Length = 1034

 Score = 1093 bits (565), Expect = 0.0
 Identities = 618/638 (96%), Gaps = 5/638 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaattcattttctcttaccagcatctactcttaggaaagtaacagatgctcattgtaaaa 60
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattcattttctctgagcagcatctactcttaggaaagtaacagatgctcattgtaaaa 260

                                                                       
Query: 61  aatgtcggaaaaagaacagttgaaggtagcaaacaagttacccgagcatgttcaacactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 261 aatgtcggaaaaagaacagttgaaggtagcaaacaagttacccgagcatgttcgacacct 320

                                                                       
Query: 121 ctgggagtggatatgcaatctagttcctgccagccacctttccacagacttctgctatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgggagtggatatgcaatctagttcctgccagccacctttccacagacttctgctatgt 380

                                                                       
Query: 181 gtaatggccctgctagagagaacaccacgcacatttgggagaaaagagtaggcatggttt 240
           | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 gcaatggccctgctagagagaacaccacgcacatttgggagaaaagagtaggcatgattt 440

                                                                       
Query: 241 tgggttcagctgttcttcccttcagtgttacagcacacttgaacttcagtcctgggtacc 300
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 tgggttcagctgttcttcccttcagtgttacagcatacttgaacttcagtcctgggtacc 500

                                                                       
Query: 301 aacagcatgagcattccatggctgtgggcaagcatgtcttagaaaacagccttgccttcc 360
           ||||| ||||||||||| |||||||||||||||||||||| |||||||| ||||| ||||
Sbjct: 501 aacagtatgagcattccgtggctgtgggcaagcatgtctttgaaaacagtcttgctttcc 560

                                                                       
Query: 361 ccacagcctacttagcacaggttagctcaacatccacgcatcactgaaactcagagaagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccacagcctacttagcacaggttagctcaacatccacgcatcactgaaactcagagaagt 620

                                                                       
Query: 421 atctgtagtcattttgaagactgcggaaatggtgtgatcttccccaagggcgctggagga 480
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 atctgtagtcattttgaagactgcggaaatggtgtgatcttccccaagggtgctggagga 680

                                                                       
Query: 481 ctggtgccctctgcaggggtgctattttcctcacagaatcctaagataccttctctgggc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctggtgccctctgcaggggtgctattttcctcacagaatcctaagataccttctctgggc 740

                                                                       
Query: 541 actgaag-cagctggtaggaggaggagacaggtgatccctgactggctctggcctgttta 599
           |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 actggaggcagctggtaggaggaggagacaggtgatccctgactggctctggcctgttta 800

                                                 
Query: 600 gcacatgaatggagctc----tcatgangcacctgaag 633
           |||||||||||||||||    |||||| ||||||||||
Sbjct: 801 gcacatgaatggagctccctctcatgaggcacctgaag 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1034
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1024
Effective search space:   637952
Effective search space used:   637952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)