Query= MSMg01no334_b17.b1 MSMg01no334_b17.b1 CHROMAT_FILE:
MSMg01no334_b17.b1 PHD_FILE: MSMg01no334_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:26 2005
(593 letters)
>mm_chr11_72715688_72716681
Length = 994
Score = 524 bits (271), Expect = e-153
Identities = 336/375 (89%), Gaps = 35/375 (9%)
Strand = Plus / Minus
Query: 222 acacacacagacacagacacacacaaactttcaggcacacacag--acacacacacacag 279
||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||
Sbjct: 990 acacacacagacacagacacacacacac--acaggcacacacagacacacacacacacag 933
Query: 280 acacacacacaggcacacacagacacacacacacacagacacacacacagacacacacag 339
|||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 932 acacacacacagacacacacagacacacacacacacagacacacacacag---------g 882
Query: 340 acacacacacacacacagacacacacacacacacagacacacacacacacagacacacac 399
||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 ---------cacacacag--acacacacacacacagacacacacacacacagacacacac 833
Query: 400 acaggcacacacagacacacacacacacacagacacacacagacagacacacacacacac 459
|||||||||||||| |||||||||||||||| |||||||| ||||||||||||
Sbjct: 832 acaggcacacacag--acacacacacacacag--acacacag------acacacacacac 783
Query: 460 agcataacaacaacaagtccccaaatatctcagcttagaatttatccagaaaaattaagt 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 agcataacaacaacaagtccccaaatatctcagcttagaatttatccagaaaaattaagt 723
Query: 520 ttcataaagattttaatcttaattatatgtatacacgtctg-cagtgtgatggtttgtat 578
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 722 ttcataaagattttaatcttaattatatgtatacacgtctgccagtgtgatggtttgtac 663
Query: 579 ctgtaagtataatgc 593
|||||||||||||||
Sbjct: 662 ctgtaagtataatgc 648
Score = 252 bits (130), Expect = 8e-71
Identities = 192/226 (84%), Gaps = 28/226 (12%)
Strand = Plus / Minus
Query: 86 acacacacacacagacacacacacagaca--cacacacacacacacacacacacagacat 143
||||||| ||||||||||||||||| ||| |||||||| |||||||||||||||||||
Sbjct: 988 acacacagacacagacacacacacacacaggcacacacagacacacacacacacagacac 929
Query: 144 acac----acacacacagacatacacacacacagacacacacacaggcacaaacacacag 199
|||| ||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 928 acacacagacacacacagacacacacacacacagacacacacacaggcaca----cacag 873
Query: 200 acacacacacagacacacacagacacacacagacacagacacacacaaactttcaggcac 259
||||||||||| |||||||||||||| ||||||||||||||| |||||||
Sbjct: 872 acacacacaca------cacagacacacacacacacagacacacaca------caggcac 825
Query: 260 acacagacacacacacaca--gacacaca--cacaggcacacacag 301
||||||||||||||||||| |||||||| |||| |||||||||
Sbjct: 824 acacagacacacacacacacagacacacagacaca--cacacacag 781
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 385
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 4
Length of query: 593
Length of database: 994
Length adjustment: 10
Effective length of query: 583
Effective length of database: 984
Effective search space: 573672
Effective search space used: 573672
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_b17.g1 MSMg01no334_b17.g1 CHROMAT_FILE:
MSMg01no334_b17.g1 PHD_FILE: MSMg01no334_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:26 2005
(505 letters)
>mm_chr11_72523188_72524095
Length = 908
Score = 936 bits (484), Expect = 0.0
Identities = 502/508 (98%), Gaps = 3/508 (0%)
Strand = Plus / Plus
Query: 1 ggattgccaggtgg-atatacctttag-actagcactctggggca-acgccagcctggtc 57
|||||||||||||| |||||||||||| ||||||||||||||||| | ||||||||||||
Sbjct: 201 ggattgccaggtggcatatacctttagtactagcactctggggcagaggccagcctggtc 260
Query: 58 tacatacagaatcttacttgagccaggtagtgatatggtgaaagcctgccccctccctcc 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacatacagaatcttacttgagccaggtagtgatatggtgaaagcctgccccctccctcc 320
Query: 118 ttttaaaaagtaaataaaggttacattttaaggaaggatatataagcttgtttacttatt 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttaaaaagtaaataaaggttacattttaaggaaggatatataagcttgtttacttatt 380
Query: 178 tatcttaaagaattttctttattaaatgaaattgtaaggtggttttatgagtattttttt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatcttaaagaattttctttattaaatgaaattgtaaggtggttttatgagtattttttt 440
Query: 238 ggtagttggggataagcaaagcattcatagcactaaacccaaggtcagatacattctgac 297
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 gggagttggggataagcaaagcattcatagcactaaacccaaggtcagaaacattctgac 500
Query: 298 cccaagtaagcagtataggatggttttagcattcttgttgcagtgtcttgacaagaagtg 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccaagtaagcagtataggatggttttagcattcttgttgcagtgtcttgacaagaagtg 560
Query: 358 tctctgtaggcaagtttggttttaacttcttgtgtaaactaggttccagggtaaattttc 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctctgtaggcaagtttggttttaacttcttgtgtaaactaggttccagggtaaattttc 620
Query: 418 ctttctgttgtgctgtggctgtactgtgacataggctgtacctcccatgctactgttgag 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttctgttgtgctgtggctgtactgtgacataggctgtacctcccatgctactgttgag 680
Query: 478 ttgtctgccctttcttagctcttcaaag 505
||||||||||||||||||||||||||||
Sbjct: 681 ttgtctgccctttcttagctcttcaaag 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 908
Length adjustment: 10
Effective length of query: 495
Effective length of database: 898
Effective search space: 444510
Effective search space used: 444510
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
