MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-334K21
Chromosome	11 (Build37)
Map Location	63,154,233 - 63,154,776
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b, Cdrt4, Tekt3, Pmp22, LOC433423, LOC100042799
Downstream gene	LOC100041690, LOC654442, LOC668297, Hs3st3b1, Cox10, 2810001G20Rik, EG544785
Link	Open Mouse BAC browser

Click to get alignment info.

name	Ncor1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20185 MGI:1349717
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pigl (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:327942 MGI:2681271
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Prr6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73139 MGI:1920389
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 78 ESTs, 4 Proteins

name	Ubb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22187 MGI:98888
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Trpv2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22368 MGI:1341836
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2410006H16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69221 MGI:1916471
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 ESTs

name	BC046404 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:192976 MGI:2682293
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC025076 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216829 MGI:2448491
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 55 ESTs, 3 Proteins

name	Zfp287 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:170740 MGI:2176561
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC626482 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:626482
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 135 ESTs, 3 Proteins pseudo : _no_value

name	LOC100042766 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042766
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 25 ESTs

name	Zfp286 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:192651 MGI:2384758
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Trim16 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:94092 MGI:2137356
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fbxw10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:213980 MGI:3052463
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fam18b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67510 MGI:1914760
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cdrt4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66338 MGI:1913588
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tekt3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71062 MGI:1918312
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pmp22 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18858 MGI:97631
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC433423 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:433423
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 Proteins pseudo : _no_value

name	LOC100042799 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042799
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 mRNAs, 275 ESTs, 24 Proteins pseudo : _no_value

name	LOC100041690 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041690
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC654442 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:654442
definition	note : high mobility group box 1 (Hmgb1) pseudogene pseudo : _no_value

name	LOC668297 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668297
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins pseudo : _no_value

name	Hs3st3b1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54710 MGI:1333853
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cox10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70383 MGI:1917633
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2810001G20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66456 MGI:1913706
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 41 ESTs

name	EG544785 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:544785 MGI:3644950
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Ncor1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:68299754 GeneID:20185 MGI:1349717
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear receptor co-repressor 1 transcript_id : NM_011308.2

name	Pigl (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142386417 GeneID:327942 MGI:2681271
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphatidylinositol glycan anchor biosynthesis, class L transcript_id : NM_001039536.2

name	Prr6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94390122 GeneID:73139 MGI:1920389
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 78 ESTs, 4 Proteins product : proline-rich polypeptide 6, transcript variant 1 transcript_id : XM_203393.4

name	Ubb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142351666 GeneID:22187 MGI:98888
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ubiquitin B transcript_id : NM_011664.3

name	Trpv2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:134053864 GeneID:22368 MGI:1341836
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transient receptor potential cation channel, subfamily V, member 2 transcript_id : NM_011706.2

name	2410006H16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149261960 GeneID:69221 MGI:1916471
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 ESTs product : RIKEN cDNA 2410006H16 gene transcript_id : XM_001479267.1

name	BC046404 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:38524603 GeneID:192976 MGI:2682293
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC046404 transcript_id : NM_198861.1

name	BC025076 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149261963 GeneID:216829 MGI:2448491
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 54 ESTs, 3 Proteins product : cDNA sequence BC025076, transcript variant 5 transcript_id : XM_901503.3

name	BC025076 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149261962 GeneID:216829 MGI:2448491
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 47 ESTs, 3 Proteins product : cDNA sequence BC025076, transcript variant 1 transcript_id : XM_618882.4

name	Zfp287 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113865958 GeneID:170740 MGI:2176561
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger protein 287 transcript_id : NM_133208.2

name	LOC100042766 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261964 GeneID:100042766
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 25 ESTs product : hypothetical protein LOC100042766 transcript_id : XM_001479316.1

name	Zfp286 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113865961 GeneID:192651 MGI:2384758
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger protein 286 transcript_id : NM_138949.3

name	Trim16 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70778827 GeneID:94092 MGI:2137356
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tripartite motif protein 16 transcript_id : NM_053169.2

name	Fbxw10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:75991691 GeneID:213980 MGI:3052463
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : F-box and WD-40 domain protein 10 transcript_id : NM_001033669.1

name	Fam18b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142368688 GeneID:67510 MGI:1914760
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : family with sequence similarity 18, member B transcript_id : NM_026210.3

name	Cdrt4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13384919 GeneID:66338 MGI:1913588
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CMT1A duplicated region transcript 4 transcript_id : NM_025496.1

name	Tekt3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:62078758 GeneID:71062 MGI:1918312
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tektin 3 transcript_id : NM_027660.1

name	Pmp22 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130612 GeneID:18858 MGI:97631
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : peripheral myelin protein transcript_id : NM_008885.2

name	Hs3st3b1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84370342 GeneID:54710 MGI:1333853
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1 transcript_id : NM_018805.2

name	Cox10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31341635 GeneID:70383 MGI:1917633
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase (yeast) transcript_id : NM_178379.2

name	2810001G20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149261919 GeneID:66456 MGI:1913706
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 41 ESTs product : RIKEN cDNA 2810001G20 gene transcript_id : XM_001476904.1

name	EG544785 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94390162 GeneID:544785 MGI:3644950
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : predicted gene, EG544785 transcript_id : XM_622137.3

name	Ncor1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:68299755 GeneID:20185 MGI:1349717
definition	GO_component : GO:0005634 - nucleus [Evidence IC] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0016564 - transcriptional repressor activity [Evidence IMP] GO_process : GO:0016568 - chromatin modification [Evidence IEA]; GO:0016481 - negative regulation of transcription [Evidence IDA]; GO:0045892 - negative regulation of transcription, DNA-dependent [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : retinoid X receptor interacting protein 13 product : nuclear receptor co-repressor 1 protein_id : NP_035438.2

name	Pigl (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:88014552 CCDS:CCDS24824.1 GeneID:327942 MGI:2681271
definition	GO_function : GO:0000225 - N-acetylglucosaminylphosphatidylinositol deacetylase activity [Evidence ISS] GO_process : GO:0006506 - GPI anchor biosynthesis [Evidence ISS] codon_start : 1 note : ortholog of human and rat phosphatidylinositol glycan class L PIGL; phosphatidylinositol glycan, class L product : phosphatidylinositol glycan anchor biosynthesis, class L protein_id : NP_001034625.1

name	Prr6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82934627 GeneID:73139 MGI:1920389
definition	codon_start : 1 product : proline-rich polypeptide 6 isoform 1 protein_id : XP_203393.3

name	Ubb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755919 CCDS:CCDS24826.1 GeneID:22187 MGI:98888
definition	codon_start : 1 product : ubiquitin B protein_id : NP_035794.1

name	Trpv2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:134053865 CCDS:CCDS24827.1 GeneID:22368 MGI:1341836
definition	GO_component : GO:0005622 - intracellular [Evidence IDA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0005262 - calcium channel activity [Evidence IEA] [Evidence IDA]; GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005261 - cation channel activity [Evidence IDA] GO_process : GO:0006816 - calcium ion transport [Evidence IEA]; GO:0009266 - response to temperature stimulus [Evidence IDA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : vanilloid receptor-like protein 1; growth factor regulated channel product : transient receptor potential cation channel, subfamily V, member 2 protein_id : NP_035836.2

name	2410006H16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149261961 GeneID:69221 MGI:1916471
definition	codon_start : 1 product : hypothetical protein LOC69221 protein_id : XP_001479317.1

name	BC046404 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38524604 CCDS:CCDS24828.1 GeneID:192976 MGI:2682293
definition	codon_start : 1 product : hypothetical protein LOC192976 protein_id : NP_942561.1

name	BC025076 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:63622129 GeneID:216829 MGI:2448491
definition	codon_start : 1 product : hypothetical protein LOC216829 isoform 1 protein_id : XP_618882.1

name	BC025076 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82934638 GeneID:216829 MGI:2448491
definition	codon_start : 1 product : hypothetical protein LOC216829 isoform 5 protein_id : XP_906596.1

name	Zfp287 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:113865959 CCDS:CCDS24830.1 GeneID:170740 MGI:2176561
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IC] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0016563 - transcriptional activator activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0045941 - positive regulation of transcription [Evidence IDA]; GO:0042035 - regulation of cytokine biosynthesis [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : zinc finger protein SKAT2 product : zinc finger protein 287 protein_id : NP_573471.2

name	LOC100042766 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261965 GeneID:100042766
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479366.1

name	Zfp286 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543186 CCDS:CCDS24831.1 GeneID:192651 MGI:2384758
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 product : zinc finger protein 286 protein_id : NP_620399.3

name	Trim16 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70778828 CCDS:CCDS24832.1 GeneID:94092 MGI:2137356
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA] GO_function : GO:0046872 - metal ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : estrogen-responsive B box product : tripartite motif protein 16 protein_id : NP_444399.2

name	Fbxw10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75991692 CCDS:CCDS24833.1 GeneID:213980 MGI:3052463
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : F-box and WD-40 domain protein 10 protein_id : NP_001028841.1

name	Fam18b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312930 CCDS:CCDS24834.1 GeneID:67510 MGI:1914760
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 note : ortholog of human family with sequence similarity 18 member B FAM18B product : hypothetical protein LOC67510 protein_id : NP_080486.1

name	Cdrt4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13384920 CCDS:CCDS24835.1 GeneID:66338 MGI:1913588
definition	codon_start : 1 product : CMT1A duplicated region transcript 4 protein_id : NP_079772.1

name	Tekt3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:62078759 CCDS:CCDS24836.1 GeneID:71062 MGI:1918312
definition	GO_component : GO:0005874 - microtubule [Evidence IEA] GO_function : GO:0005198 - structural molecule activity [Evidence IEA] GO_process : GO:0000226 - microtubule cytoskeleton organization and biogenesis [Evidence IEA] codon_start : 1 product : tektin 3 protein_id : NP_081936.1

name	Pmp22 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679395 CCDS:CCDS24837.1 GeneID:18858 MGI:97631
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0007050 - cell cycle arrest [Evidence IEA] codon_start : 1 note : peripheral myelin protein, 22 kDa product : peripheral myelin protein protein_id : NP_032911.1

name	Hs3st3b1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84370343 CCDS:CCDS24838.1 GeneID:54710 MGI:1333853
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008467 - heparin-glucosamine 3-O-sulfotransferase activity [Evidence IDA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006477 - protein amino acid sulfation [Evidence IDA] codon_start : 1 product : D-glycosaminyl 3-O-sulfotransferase-3B protein_id : NP_061275.2

name	Cox10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30410008 CCDS:CCDS24839.1 GeneID:70383 MGI:1917633
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence ISS] [Evidence IDA] GO_function : GO:0004311 - farnesyltranstransferase activity [Evidence ISS]; GO:0004659 - prenyltransferase activity [Evidence IEA]; GO:0008495 - protoheme IX farnesyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0009060 - aerobic respiration [Evidence IMP]; GO:0017004 - cytochrome complex assembly [Evidence IDA]; GO:0006784 - heme a biosynthesis [Evidence IMP] [Evidence IDA]; GO:0006783 - heme biosynthesis [Evidence IEA]; GO:0000266 - mitochondrial fission [Evidence IMP]; GO:0007005 - mitochondrion organization and biogenesis [Evidence IMP]; GO:0018347 - protein amino acid farnesylation [Evidence ISS] codon_start : 1 product : COX10 homolog, cytochrome c oxidase assembly protein, heme A: farnesyltransferase protein_id : NP_848466.1

name	2810001G20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149261920 GeneID:66456 MGI:1913706
definition	codon_start : 1 product : hypothetical protein LOC66456 protein_id : XP_001476954.1

name	EG544785 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94390163 GeneID:544785 MGI:3644950
definition	codon_start : 1 product : hypothetical protein protein_id : XP_622137.3

name	LOC433423 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:433423
definition	number : 3 pseudo : _no_value

name	LOC433423 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:433423
definition	number : 2 pseudo : _no_value

name	LOC433423 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:433423
definition	number : 1 pseudo : _no_value

name	LOC100041690 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041690
definition	number : 3 pseudo : _no_value

name	LOC100041690 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041690
definition	number : 2 pseudo : _no_value

name	LOC100041690 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041690
definition	number : 1 pseudo : _no_value

name	LOC668297 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668297
definition	number : 1 pseudo : _no_value

name	LOC668297 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668297
definition	number : 2 pseudo : _no_value

name	LOC668297 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668297
definition	number : 3 pseudo : _no_value

name	LOC668297 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668297
definition	number : 4 pseudo : _no_value

name	LOC668297 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668297
definition	number : 5 pseudo : _no_value

name	LOC626482 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261917 GeneID:626482
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 135 ESTs, 3 Proteins product : similar to SOCS box-containing WD protein SWiP-2 pseudo : _no_value transcript_id : XR_032900.1

name	LOC100042799 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261970 GeneID:100042799
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 mRNAs, 275 ESTs, 24 Proteins product : similar to Glyceraldehyde-3-phosphate dehydrogenase pseudo : _no_value transcript_id : XR_034186.1

clone name	MSMg01-306B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-539O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-523L09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-277C22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079N22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-523H06
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-125P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-138P02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-407F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-536G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-338B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-545N08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133K05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-491M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-046C23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140N04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-530F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063H02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-469E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-266P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-061B04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-160K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-302L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-146M09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-174A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-326G13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-164N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-446A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-523E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-400M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-069K01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-294K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392N18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-073K22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-106D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-192P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-138B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-126P17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-082A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-081P24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-398N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-437K17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-268I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-271O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468I13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-055A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-162C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448L15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-360J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441D24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-460D02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-138H19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-052M07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-218C16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-452L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-520B08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-066I18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-174B21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-313K15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-479A06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-432K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-277P18
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-078F02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-119J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-381M09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-075C10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-322B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-474I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462L05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-445L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337O05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351L14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453L08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-084N05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-491D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-380J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-171B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-523A15
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-206A08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-420F08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-444B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-465O21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538K07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-477M23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-510K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-194F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-143G07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487M06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-114L05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-370O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032P05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-343N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211I24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-206K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176J19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-113J18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-272I06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-230P13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220B20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304N11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-145K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070J08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-153F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224I05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-336N21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-350O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307E20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192P16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-160N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027J12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-326E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204F07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114H14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-284G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318C12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093J12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230I06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-102P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189L08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104K12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-012G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102B21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-287M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188H20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-262E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-168O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245F15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-155H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124G24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-267F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-145D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307J23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-169B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-246K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-196J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226F08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-181C17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-199N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073H03
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-334K21.T7 (MSMg01no334_k21.b1)	MSMg01-334K21.TJ (MSMg01no334_k21.g1)
ACC	AG450115	AG450116
length	780	732
length of high quality (start - end)	251 (77 - 327)	545 (75 - 619)
definition	CHROMAT_FILE: MSMg01no334_k21.b1 PHD_FILE: MSMg01no334_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:11 2005	CHROMAT_FILE: MSMg01no334_k21.g1 PHD_FILE: MSMg01no334_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:11 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACCGATGCCGCGG AATTCAAGGCAGGCTTCCCAACAGATAGTCATAACACCCACAGTCTAGAG CAGAGAAAGAAATAAGTATGTATGTACGCATGCATGCTTGCTTTCTTGCT TGCTTGCTGCCTGGCTGGCTCGCTGGCTGGGTGGATGGCTTGCTTGCTAT TTCTGCTCAGCTATCTTTCTTTATACTCACACAGTTCAGGGTCCAGACCA TGAAAAAGGGGTGCCTATTCATGATGGATTTTCCCACTCTAATTAACAAT GAAGACAATCCCCCACAAACATGCCCTTTTTTCAGCCCATTCTAGATAAT TCCTCAGCTGAGACTCTTTGCCCAAGTCACTCTAGGTTGTGTCAAATTGG CATTTAAAACTAATCAACCCAGACCACACAATGTAATGCTTTGTAACTAC AGGGTTTTAATTTCACTTGGGCCTAATGTATAATACACTGTTGTTTATTA TGATATATCGCTGACATCTCAAACTCTCTCCCTATTAGCCTCCCTAACTC TTTAACATCCCCTAATAGATCACTAAAAACTTTCCTATATCCATGCTGCA ATACTCTCCACTTGCCCTTCTAATCAACCATAAACTGCTACTTTACATAT ACCCATCCCCCCATCTCCCCCCATTATCTATTCTCCATCCATTTTTCTAT ACCACCCCCATTCCTCCTATTTTTATCTTCCCTTAAACTCCCCTCATTAC CATCTTATTATCCACCCTACCTACACACTA	CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXAAAATACAATCAGTCTGAGAGAGTGATGAAACACA GAGAGAAATTCTGAAATAACCATGCCCAGGCCTGAGTATTTTGCCTTAAA GCCCATAGAAATGCTTAATTAAAGAAGCCCTTGACAAGAATAAATTCACT TCAAAAATTCCAGTGCAGCAGATTTTAGTTCACTTCTCATCTCCTTTGGG TTTTTATCTCTGGAATTCAGGAACAAAATATCTTGCTTTTTGGTTAATAA GACTGGCCTTTAATGGATGATAATGTCAGGTGATTAATAACCAGCAGGCT CTGATTGTTTTCATTAGAATGATAACATATGGCCACATTGCTCAACCCCT CACAGAACCCTGAAATGGGATCATAAAAGGGGAGATGAGAAATTCTGGTT TAGATTAAAGCAAATGGCTTGAGGAATTGGCTCAGATGAGCTACAATTTA CTGTGGTAAAATCTCACAGAGATGAACTGCCTGCAGTTTTTTCCTCTCGT ATTTGAGATCAGTGGGAGGTAATGGTAAGGGATGGTAGTGTGCTTGTTCT TAGCAGTTTCCATTCCAGTGACGTAGGTTATAAATGAGGTGTGTGTGTCC GTGTGTGTCCGTGTGTGTCTGTGTCCTCCATCAAATTCCCAGCAAGCACT TTAACTGTGGCCTCTAAACCTACAGGTATAGN
quality values	Open. Hide. 8 8 8 8 8 8 8 11 12 25 25 33 31 30 27 28 37 25 21 11 10 10 21 21 37 25 19 26 26 24 25 27 27 9 9 6 6 6 6 6 6 6 6 6 6 8 8 22 18 23 28 31 31 44 33 33 33 33 42 30 23 11 9 9 9 12 8 8 8 6 6 8 9 9 9 11 11 25 23 39 39 41 41 50 50 50 53 50 57 57 50 50 48 48 57 57 48 48 42 43 43 39 39 36 43 39 59 47 54 54 57 57 54 54 54 48 47 48 43 48 47 42 32 21 12 11 11 11 19 27 44 57 57 57 43 43 43 48 43 43 43 43 43 43 43 48 48 48 46 43 43 43 43 47 47 54 48 48 48 48 47 40 35 35 35 39 39 43 43 39 43 43 39 39 35 37 33 32 24 20 21 18 12 8 8 8 12 15 25 30 34 37 47 48 59 59 48 48 48 48 48 48 57 57 57 57 40 40 28 32 32 47 59 59 59 54 54 54 54 54 54 54 54 54 54 57 48 47 47 47 46 37 37 25 44 25 40 30 37 32 37 32 40 37 30 30 42 44 57 57 57 57 44 43 42 41 28 16 14 14 18 18 36 37 42 43 43 47 34 32 14 14 14 28 32 39 39 39 42 42 47 57 54 54 48 48 50 48 48 48 46 43 43 43 43 43 43 43 43 43 29 30 17 20 20 37 30 43 33 33 43 43 47 47 57 48 48 48 48 48 41 34 25 19 12 10 10 8 8 8 8 10 12 12 16 18 32 34 39 43 43 37 37 28 28 28 37 30 39 32 32 39 39 30 32 28 28 28 19 27 12 12 12 25 25 35 35 28 24 14 14 14 15 15 12 12 11 11 11 12 12 15 21 15 19 13 13 13 19 19 19 17 14 19 21 23 28 24 12 12 12 11 12 9 11 11 11 17 20 28 19 18 13 13 13 19 16 22 16 18 9 8 8 12 8 8 8 8 7 8 10 11 9 9 9 10 10 15 15 20 24 24 20 19 15 12 12 12 12 12 18 15 11 11 11 13 19 13 18 12 10 10 10 10 12 14 12 15 8 8 8 8 8 8 9 12 16 17 19 15 17 16 10 10 11 13 11 11 17 13 12 12 12 21 12 17 12 12 11 12 11 12 12 11 11 10 10 10 13 11 8 8 8 8 6 6 8 8 10 10 11 11 11 10 9 9 9 9 9 9 12 12 13 14 13 17 10 10 9 10 10 9 9 10 8 8 8 8 10 12 8 8 8 8 8 8 10 11 9 8 8 8 8 8 8 8 8 8 6 6 8 8 8 8 8 8 8 8 6 6 8 8 9 8 8 8 8 8 8 8 10 10 15 15 12 11 11 11 10 12 10 10 10 10 10 10 11 9 9 9 9 8 8 6 6 8 8 8 8 8 8 8 8 6 6 8 8 10 11 8 10 8 8 10 8 8 8 8 8 8 8 8 8 10 9 10 11 14 10 10 10 10 8 8 8 8 10 8 10 9 10 8 8 8 8 8 8 16 14 9 13 8 8 8 8 9 9 12 9 9 8 13 15 11 8 8 9 9 9 9 11 12 14 14 10 10 12 10 10 9 8 8 8 8 8 8 12 8 10 13 8 8 8 8 12 8 8 8 8 9 9 9 9 11 8 8 6 6 8 6 9 8 9 8 6 6 6 6 8 6 8 8 8 8 6 6 8 6 6 8 8 9 12 13 11 6 6 6 8 8 8 8 6 6 7 7 8 6 6 8 8 8 8 10 10 8 9 9 9 9	Open. Hide. 9 9 8 10 9 9 8 8 10 9 8 8 9 12 15 41 37 37 39 40 41 41 41 41 37 37 37 37 30 25 12 6 6 6 6 6 6 6 6 6 6 7 6 8 8 13 8 10 10 26 21 50 50 42 28 25 12 9 6 6 6 6 6 6 8 8 8 10 8 8 8 8 8 8 19 21 37 37 48 48 53 53 57 57 57 53 53 50 37 37 47 47 47 47 47 47 47 47 47 51 51 51 68 68 68 68 68 68 68 50 50 68 57 50 47 48 41 47 36 44 28 23 23 28 28 40 34 68 68 68 68 68 57 57 57 47 47 57 57 50 50 57 57 57 57 59 59 59 68 68 68 68 68 68 68 68 68 68 50 50 50 50 50 51 57 57 57 57 57 57 68 68 68 68 68 68 68 59 59 59 68 57 57 57 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 57 57 68 68 68 57 57 68 68 57 57 59 59 59 57 57 57 57 57 57 57 57 57 57 68 68 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 68 68 62 62 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 43 43 39 20 20 14 14 13 23 23 23 39 44 44 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 62 44 44 26 26 26 43 44 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 62 62 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 62 62 57 43 43 35 43 43 57 57 57 57 57 57 57 57 57 45 52 52 52 57 57 57 52 52 59 59 57 57 57 57 57 45 39 34 34 18 18 34 38 47 52 52 52 52 57 57 57 57 57 59 57 57 52 57 57 57 59 54 54 54 57 57 57 59 52 43 44 31 31 44 44 57 57 57 52 57 57 54 54 57 57 57 57 57 57 44 42 42 43 43 59 57 59 59 59 59 57 57 57 57 57 57 57 57 57 57 57 57 57 59 59 59 59 59 59 59 48 47 47 59 59 59 59 59 59 59 68 59 59 59 59 57 54 54 59 57 68 57 57 59 48 37 43 27 25 12 13 13 21 28 33 32 24 16 14 23 24 29 28 34 23 32 28 25 25 32 32 37 37 34 37 30 25 25 33 37 41 41 40 39 33 22 21 18 16 15 11 11 11 24 24 26 27 26 37 36 39 39 41 25 16 12 11 10 13 12 18 18 17 18 18 28 26 34 34 36 36 39 30 28 13 13 13 15 15 24 28 30 34 32 30 28 28 23 23 30 36 33 28 25 25 25 21 14 14 10 8 8 10 21 24 23 18 21 12 12 11 12 11 18 18 22 16 10 10 11 9 9 12 15 18 11 9 9 10 10 10 12 14 13 13 15 21 15 15 19 20 18 12 14 14 12 10 10 9 8 12 7 7 8 8 12 9 10 13 11 11 8 13 10 8 8 8 10 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no334_k21.g1 MSMg01no334_k21.g1 CHROMAT_FILE:
MSMg01no334_k21.g1 PHD_FILE: MSMg01no334_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:11 2005
         (545 letters)



>mm_chr11_63154033_63154976
          Length = 944

 Score = 1015 bits (525), Expect = 0.0
 Identities = 540/545 (99%), Gaps = 1/545 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagtctgagagagtgatgaaacacagagagaaattctgaaataaccatgcccaggcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagtctgagagagtgatgaaacacagagagaaattctgaaataaccatgcccaggcctg 260

                                                                       
Query: 61  agtattttgccttaaagcccatagaaatgcttaattaaagaagcccttgacaagaataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtattttgccttaaagcccatagaaatgcttaattaaagaagcccttgacaagaataaa 320

                                                                       
Query: 121 ttcacttcaaaaattccagtgcagcagattttagttcacttctcatctcctttgggtttt 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 ttcacttcaaaaattccagtgcagcaaattttagttcacttctcatctcctttgggtttt 380

                                                                       
Query: 181 tatctctggaattcaggaacaaaatatcttgctttttggttaataagactggcctttaat 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 tatctctggaattcaggaacaaaatatct-gctttttggttaataagactggcctttaat 439

                                                                       
Query: 241 ggatgataatgtcaggtgattaataaccagcaggctctgattgttttcattagaatgata 300
           ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggatgataaggccaggtgattaataaccagcaggctctgattgttttcattagaatgata 499

                                                                       
Query: 301 acatatggccacattgctcaacccctcacagaaccctgaaatgggatcataaaaggggag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 acatatggccacattgctcaacccctcacagaaccctgaaatgggatcataaaaggggag 559

                                                                       
Query: 361 atgagaaattctggtttagattaaagcaaatggcttgaggaattggctcagatgagctac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atgagaaattctggtttagattaaagcaaatggcttgaggaattggctcagatgagctac 619

                                                                       
Query: 421 aatttactgtggtaaaatctcacagagatgaactgcctgcagttttttcctctcgtattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aatttactgtggtaaaatctcacagagatgaactgcctgcagttttttcctctcgtattt 679

                                                                       
Query: 481 gagatcagtgggaggtaatggtaagggatggtagtgtgcttgttcttagcagtttccatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 680 gagatcagtgggaggtaatggtaagggatggtagtgtgcttgttcttagtagtttccatt 739

                
Query: 541 ccagt 545
           |||||
Sbjct: 740 ccagt 744


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 944
Length adjustment: 10
Effective length of query: 535
Effective length of database: 934
Effective search space:   499690
Effective search space used:   499690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information