Query= MSMg01no335_k12.b1 MSMg01no335_k12.b1 CHROMAT_FILE:
MSMg01no335_k12.b1 PHD_FILE: MSMg01no335_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:29 2005
(601 letters)
>mm_chr11_77439964_77440969
Length = 1006
Score = 1071 bits (554), Expect = 0.0
Identities = 592/611 (96%), Gaps = 14/611 (2%)
Strand = Plus / Plus
Query: 1 atagtgagttccaggacagacagggctacacaaggaaacctagcctggaaaaaaaa-tga 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 200 atagtgagttccaggacagacagggctacacaaggaaacctagcctggaaaaaaaaatga 259
Query: 60 taaaattccagagaagacaaacccacagtaagtactagataacaaggccaaagctactct 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 taaaattccagagaagacaaacccacagtaagtactagataacaaggccaaagctactct 319
Query: 120 agaagat-aaaaaaaaaaaagaaaaacaggcaggggccaggagctgcctggaagaatacc 178
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agaagattaaaaaaaaaaaaaaaaaacaggcaggggccaggagctgcctggaagaatacc 379
Query: 179 taagtttcccccccc----aacataaacagataagtggttcgtgtgccagttaggcattt 234
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 taagtttccccccccccccaacataaacagataagtggttcgtgtgccagttaggcattt 439
Query: 235 tgacaacaattttacttttaa----gcaactcactccacttagctcagctgttttattct 290
||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 440 tgacaacaattttac----aaaaaagcaactcactccacttagctcagctgttttattct 495
Query: 291 aagatataatatatcccagaaaggcctgaggagcaagacaacattttggcattttcaccc 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aagatataatatatcccagaaaggcctgaggagcaagacaacattttggcattttcaccc 555
Query: 351 taatgcttagtcattagcatgacttagctgtttccccgggctggggcctcatttagaatt 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 taatgcttagtcattagcatgacttagctgtttccccgggctggggcctcatttagaatt 615
Query: 411 atcagttgcttcctttctttaaaattaaaatgtttgttcttagtattgtttttcttcggt 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 atcagttgcttcctttctttaaaattaaaatgtttgttcttagtattgtttttcttcggt 675
Query: 471 gctggggagtctcacatatgctaggtaatattctacaactgagtttagtctctgtgtttc 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gctggggagtctcacatatgctaggtaatattctacaactgagtttagtctctgtgtttc 735
Query: 531 attttcttctttgagataccgagcttacagtttctttttagctaanaaccttggctcccg 590
||||||||||||||||||| ||||||||||||||||||||| ||| |||||||| |||||
Sbjct: 736 attttcttctttgagatactgagcttacagtttctttttaggtaaaaaccttgggtcccg 795
Query: 591 ttctcaccctt 601
|||||||||||
Sbjct: 796 ttctcaccctt 806
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1006
Length adjustment: 10
Effective length of query: 591
Effective length of database: 996
Effective search space: 588636
Effective search space used: 588636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no335_k12.g1 MSMg01no335_k12.g1 CHROMAT_FILE:
MSMg01no335_k12.g1 PHD_FILE: MSMg01no335_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:30 2005
(480 letters)
>mm_chr11_77639260_77640139
Length = 880
Score = 890 bits (460), Expect = 0.0
Identities = 475/480 (98%)
Strand = Plus / Minus
Query: 1 ttctactaccccatggagaccaaggaaaccaagcctgcggccacatctggcctaaggtgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttctactaccccatggagaccaaggaaaccaagcctgcggccacatctggcctaaggtgc 621
Query: 61 ccttcctgtgcctctgtctctggattatctcccttgtcttccttaggcaggaagaactgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ccttcctgtgcctctgtctctggattatctcccttgtcttccttaggcaggaagaactgc 561
Query: 121 ccacaccgcattcttgcttggcttttagggcctggcagacaagaaaaataagacaattga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ccacaccgcattcttgcttggcttttagggcctggcagacaagaaaaataagacaattga 501
Query: 181 tctctttgatctactgcctgtatctttttccccatagaagggagtagggtatgagtccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tctctttgatctactgcctgtatctttttccccatagaagggagtagggtatgagtccca 441
Query: 241 gaaggtctttggccagtgggtggggatggtattctagtagctggagaagaatagcaggac 300
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaaggccaagggccagtgggtggggatggtattctagtagctggagaagaatagcaggac 381
Query: 301 ggagtgacgtgatatgtggcactggagatccctccccagaaccagcagagaccttgggag 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggagtgatgtgatatgtggcactggagatccctccccagaaccagcagagaccttgggag 321
Query: 361 gctgcctgatttacagcctgacacacgtctgccccctgctgctcaggagacgccaggaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gctgcctgatttacagcctgacacacgtctgccccctgctgctcaggagacgccaggaca 261
Query: 421 acttcctcacatctgaagatgtcaaaggctctccagggaggccaccacaggagcccaggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 acttcctcacatctgaagatgtcaaaggctctccagggaggccaccacaggagcccaggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
