Query= MSMg01no336_a10.b1 MSMg01no336_a10.b1 CHROMAT_FILE:
MSMg01no336_a10.b1 PHD_FILE: MSMg01no336_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:59 2005
(482 letters)
>mm_chr11_118285060_118285937
Length = 878
Score = 833 bits (431), Expect = 0.0
Identities = 472/499 (94%), Gaps = 22/499 (4%)
Strand = Plus / Plus
Query: 1 agcctttgcctgtgggatagccgggcagacgagcccagaatagccggcttggcagaatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcctttgcctgtgggatagccgggcagacgagcccagaatagccggcttggcagaatgt 260
Query: 61 tagggccccagtgggagaagacatagagctgctaatgacatgctgtgctcactggggacc 120
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct: 261 tagggccccagtgggagaagacatggggctgctaatgacatgctgtgctcactggggacc 320
Query: 121 cagtgtctctctacagcagcccaggtctcacagccctttccccaaaccagagaacagcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagtgtctctctacagcagcccaggtctcacagccctttccccaaaccagagaacagcag 380
Query: 181 caggaatgatgtcaccagggagaaggaaagaattgcccagccagccgggactggggagat 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 caggaatgatgtcaccagggagaaggaaagaattgcccagcc----gggactggggagac 436
Query: 241 gcctcagcatggtgcaagagcacctgctggacaagcttggggatggagatctcaaaggta 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gcctcagcagggtgcaagagcacctgctggacaagcttggggatggagatctcaaaggta 496
Query: 301 atcgggtgaggagtgaccaacacgcacacacgcgcgcacacacacatgcacacaca---- 356
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 497 atcgggtgaggagtgaccaacacgcacacacgcgcacacacacacatgcacacacatgca 556
Query: 357 --------------cacacacacacacactcacacacacagaccaaaaaacatcaaacag 402
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cacacacacacacacacacacacacacactcacacacacagaccaaaaaacatcaaacag 616
Query: 403 atacaccacatacacacatatatacacaaaagcaaataaatatagcactacaatatgtcg 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 atacaccacatacacacatatatacacaaaagcaaataaatatagcactacaatatgtcg 676
Query: 463 gggcagagcatgcccctgt 481
|||||||||||||||||||
Sbjct: 677 gggcagagcatgcccctgt 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 878
Length adjustment: 10
Effective length of query: 472
Effective length of database: 868
Effective search space: 409696
Effective search space used: 409696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_a10.g1 MSMg01no336_a10.g1 CHROMAT_FILE:
MSMg01no336_a10.g1 PHD_FILE: MSMg01no336_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:59 2005
(550 letters)
>mm_chr11_118498150_118499100
Length = 951
Score = 926 bits (479), Expect = 0.0
Identities = 522/551 (94%), Gaps = 24/551 (4%)
Strand = Plus / Minus
Query: 1 tatagctgaaggtggaagcagacgttccttgcctgatagggtgtgggcagtggatgtgcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tatagctgaaggtggaagcagacgttccttgcctgatagggtgtgggcagtggatgtgcg 571
Query: 61 ccaaccctggagaagcatggctgtggagaggtccttttctttccctctctttgatgggcc 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 570 ccaaccctggagaagcatggctgtggagaggtccttttcttcccctctctttgatgggcc 511
Query: 121 tgtcagctgctgagtaacacctgccaagctgcgcttgaagacttccacatgaagactcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tgtcagctgctgagtaacacctgccaagctgcgcttgaagacttccacatgaagactcct 451
Query: 181 gtcagatgcctgtgtggctcaggttctccttccctgagaaaatggtgcaaatggagttcc 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gtcagattcctgtgtggctcaggttctccttccctgagaaaatggtgcaaatggagttcc 391
Query: 241 aaggagggaagccacgagtccctgagatctttcttcgtgcacaggaagagacggcaaagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aaggagggaagccacgagtccctgagatctttcttcgtgcacaggaagagacggcaaagg 331
Query: 301 gttac-atcccagtagcttatccatgtaaatgtgagatggccaggccccagaagctggtg 359
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 330 gttacaatcccagtagcttatccatgtaaatgtgagatggccaggccccggaagctggtg 271
Query: 360 tgactggacagagaatggagccctctgaacaaagctgagtgaaaggagatggagcccgga 419
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tgactggacagagaatggagccctctgaacaaagctgagtgaa----------------- 228
Query: 420 gagagcaggagatggagcccagagagagcaggctcgtagcttgtgcccaagcaggtggcc 479
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 227 ------aggagatggagcccagagagagcaggatcgtagcttgtgcctaagcaggtggcc 174
Query: 480 aatgccctgagccgtcccatatcgatggcagattctgcaggcatagaggaaggttgtaac 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 aatgccctgagccgtcccatatcgatggcagattctgcaggcatagaggaaggttgtaac 114
Query: 540 ttctgatgcca 550
|||||||||||
Sbjct: 113 ttctgatgcca 103
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 951
Length adjustment: 10
Effective length of query: 540
Effective length of database: 941
Effective search space: 508140
Effective search space used: 508140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
