Query= MSMg01no336_h17.b1 MSMg01no336_h17.b1 CHROMAT_FILE:
MSMg01no336_h17.b1 PHD_FILE: MSMg01no336_h17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:33 2005
(526 letters)
>mm_chr11_105604762_105605687
Length = 926
Score = 982 bits (508), Expect = 0.0
Identities = 519/523 (99%), Gaps = 1/523 (0%)
Strand = Plus / Plus
Query: 5 gaattcttgacattcaaccaaatgtctagtaatttcaactcccttctcactttggagata 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcttgacattgaaccaaatgtctagtaatttcaactcccttctcactttggagata 263
Query: 65 aatttgctttagtgagcagtttttgtagatatggcaatgcctaatctactaatataaatt 124
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 264 aatttgctttagtgagcagtttttctagatatggcaatgcctaatctactaatataaatt 323
Query: 125 acagttcttcatttgtgtgtgcaatgtgacattgaactatggtacctcttgtatttctag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acagttcttcatttgtgtgtgcaatgtgacattgaactatggtacctcttgtatttctag 383
Query: 185 cttttaaatttttttaaaaaa-tttttattggttattttgtttttttacatttcaaatgt 243
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cttttaaatttttttaaaaaattttttattggttattttgtttttttacatttcaaatgt 443
Query: 244 tatctcccttcttggtttcccctccgaaaaccccccatccaaccctctctgccccctgcc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tatctcccttcttggtttcccctccgaaaaccccccatccaaccctctctgccccctgcc 503
Query: 304 tccatgagggtgctctcccactcactcacccactcactcccattctaccgtcctcacagt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tccatgagggtgctctcccactcactcacccactcactcccattctaccgtcctcacagt 563
Query: 364 cccctatgctggggcatcaagccttcataggaccaagggcctcccctccctttgatgcca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cccctatgctggggcatcaagccttcataggaccaagggcctcccctccctttgatgcca 623
Query: 424 gagtgtagttatataattttcctagactgtatcttggattttgaaaaacattatcaagct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gagtgtagttatataattttcctagactgtatcttggattttgaaaaacattatcaagct 683
Query: 484 gatctgtctgcagtggntttgtttcatgttcctatttttgttt 526
|||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 684 gatctgtctgcagtggttttgtttcatgttcctatttttgttt 726
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space: 472656
Effective search space used: 472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_h17.g1 MSMg01no336_h17.g1 CHROMAT_FILE:
MSMg01no336_h17.g1 PHD_FILE: MSMg01no336_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:33 2005
(489 letters)
>mm_chr11_105788408_105789299
Length = 892
Score = 907 bits (469), Expect = 0.0
Identities = 483/489 (98%), Gaps = 3/489 (0%)
Strand = Plus / Minus
Query: 1 ccagaggaaaaggagaagtcacacctctcaacaagcacgaggcagggcagtatggccctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ccagaggaaaaggagaagtcacacctctcaacaagcacgaggcagggcagtatggccctc 630
Query: 61 agagtaaaggcggtagcagaccccttcttgagaactgggcagcctgagggcagacaggta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 agagtaaaggcggtagcagaccccttcttgagaactgggcagcctgagggcagacaggta 570
Query: 121 gggtggatggggctgctgagcgctcagagcct---caagagatgggcacagaggcagcat 177
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 569 gggtgggtggggctgctgagcgctcagagcctcaacaagagatgggcacagaggcagcat 510
Query: 178 atcctgccacctggggagcctgttccattgtgtggcaaagattcagtgagcaactggttt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 atcctgccacctggggagcctgttccattgtgtggcaaagattcagtgagcaactggttt 450
Query: 238 tgtccaaggcatttctgcagtagaaaaataaccatctttaatcaaccacccaactgtgat 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tgtccaaggcatttctgcagtagaaaaataaccatctttaatcaaccacccaactgtgat 390
Query: 298 tcttctggagttataaaagccggaggctgagtgaactgagaggaacggtttctaacgggg 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tcttctggagttataaaagccggaggctgagtgaactgagaggaacggtttctaacgggg 330
Query: 358 agaaagggagcgcaatgtaacctcgcaaacgtggtgtccagagtctgccttgctacaggg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 agaaagggagcgcaatgtaacctcgcaaacgtggtgtccagagtctgccttgctacaggg 270
Query: 418 gcatggctgcaggaagccccctcaggcttgtgttctcttcttcctgaacctctagtctgt 477
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 269 gcatggctgcaggaagccccctcaggcttgtgttcccttcttcctgaacctctagtctgt 210
Query: 478 ggggccccc 486
||||||||
Sbjct: 209 agggccccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 892
Length adjustment: 10
Effective length of query: 479
Effective length of database: 882
Effective search space: 422478
Effective search space used: 422478
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
