Query= MSMg01no336_i18.b1 MSMg01no336_i18.b1 CHROMAT_FILE:
MSMg01no336_i18.b1 PHD_FILE: MSMg01no336_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:38 2005
(560 letters)
>mm_chr11_14863357_14864316
Length = 960
Score = 1013 bits (524), Expect = 0.0
Identities = 548/556 (98%), Gaps = 1/556 (0%)
Strand = Plus / Plus
Query: 5 gaattcaaaaggagtacatatgttcggactcaggccttgcttagtgtactgcttattttc 64
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 205 gaattcaaaaggactacatatgttcggactcaggccttgcttagtgtattgcttattttc 264
Query: 65 atagatttctttttcttaatttctgtttctcatagttatttgcaagattatttccatgat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atagatttctttttcttaatttctgtttctcatagttatttgcaagattatttccatgat 324
Query: 125 tatcagctataaagttgtttaagaatggattttagtcaccaattttagctttggttctta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatcagctataaagttgtttaagaatggattttagtcaccaattttagctttggttctta 384
Query: 185 tcataacactgaagaattaaaattacagtaaaagagactggaaaagcagtttggtgatta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcataacactgaagaattaaaattacagtaaaagagactggaaaagcagtttggtgatta 444
Query: 245 aaagtcctcattttccttagaagacaagggtttggtttccagcagccacaaagaggctta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaagtcctcattttccttagaagacaagggtttggtttccagcagccacaaagaggctta 504
Query: 305 caacaatctgtaactccagttttaggagattaaacatgctcttctcatcactgcaggcaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caacaatctgtaactccagttttaggagattaaacatgctcttctcatcactgcaggcaa 564
Query: 365 aaaggtatgtatgtcatagacttacacacatagtggcaaaacactcatacacataaaaaa 424
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 565 aaaggtatgtatgtcatagacttgtgcacatagtggcaaaacactcatacacataaaaat 624
Query: 425 tattttttacgtaaatatcactaacaataatttcatctcatttcttaattaacattctat 484
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 625 t-ttttttacgtaaatatcactaacaataatttcatctcattttttaattaacattctat 683
Query: 485 aactcattcagacaacttaacttgaatattctggcctatattaaatttttattagatttc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aactcattcagacaacttaacttgaatattctggcctatattaaatttttattagatttc 743
Query: 545 ttttttaaatttacat 560
||||||||||||||||
Sbjct: 744 ttttttaaatttacat 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_i18.g1 MSMg01no336_i18.g1 CHROMAT_FILE:
MSMg01no336_i18.g1 PHD_FILE: MSMg01no336_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:38 2005
(558 letters)
>mm_chr11_14987736_14988693
Length = 958
Score = 870 bits (450), Expect = 0.0
Identities = 496/512 (96%), Gaps = 6/512 (1%)
Strand = Plus / Minus
Query: 50 ttgtctacatagtgtttcctagaacagt-agagacagtcttaatcaaacaagggtttacc 108
|||||||||||||||||||||||||||| || ||||||||||| |||||||||| ||||
Sbjct: 958 ttgtctacatagtgtttcctagaacagtaag-gacagtcttaaccaaacaaggg--tacc 902
Query: 109 atgagaaaagttagggaatcccactgagacaggtttcttcactaggcccaaagaaatcag 168
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 atgagaaaagttagggaataccactgagacaggtttcttcactaggcccaaagaaatcag 842
Query: 169 gcagaactatggagcataaataaaattttatgcctcaatccagg-tttttaaa-tttgtt 226
||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||
Sbjct: 841 gcagaactatggagcataaataaaattttatgcctcagtccaggttttttaaattttgtt 782
Query: 227 ttaatattaataacagggaggaaggtgtgtcagcttcagagaagaaatgagaaagcccag 286
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 781 ttaatattaataacagggaggaaggtgtttcagcttcagagaagaaatgagaaagcccag 722
Query: 287 catgtcaagatgagcatacttaggcttttggccagcatctggaataataagacagaaagt 346
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 721 catgtcaagatgagcatacttaggtttttggccagcatctggaataataagacagaaagt 662
Query: 347 gtaaattacacttgtctgaaaaactgtgttcaaagagtgaagctgtaaagtgcctgcaac 406
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gtaaattacacttgtccgaaaaactgtgttcaaagagtgaagctgtaaagtgcctgcaac 602
Query: 407 aaggtatgggcttgttaaggcaaaataaggaaatagtcctcaactactctagtatggctt 466
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aaggtacgggcttgttaaggcaaaataaggaaatagtcctcaactactctagtatggctt 542
Query: 467 taggtgaatcacctttcttgatgagggattcctgaccactgttttgatggtatacttttg 526
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 taggtgaatcgcctttcttgatgagggattcctgaccactgttttgatggtatacttttg 482
Query: 527 aataactcttaatggatgagacactattatgt 558
|||||||||||| ||| |||||||||||||||
Sbjct: 481 aataactcttaacggacgagacactattatgt 450
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space: 519504
Effective search space used: 519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
