Query= MSMg01no337_l07.b1 MSMg01no337_l07.b1 CHROMAT_FILE:
MSMg01no337_l07.b1 PHD_FILE: MSMg01no337_l07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:10 2005
(563 letters)
>mm_chr11_117798135_117799097
Length = 963
Score = 868 bits (449), Expect = 0.0
Identities = 533/581 (91%), Gaps = 37/581 (6%)
Strand = Plus / Plus
Query: 5 gaattctgaaagtctc-caatcacaaaaactatcaacaactggcaaaaatcacacctctg 63
|||||||||||||| | |||||||| |||||||||||| ||||| |||||||||||||||
Sbjct: 198 gaattctgaaagtcacacaatcacagaaactatcaacagctggc-aaaatcacacctctg 256
Query: 64 ctagagcacgaggcaact-------------cagcc---agctg-----caccccgacat 102
|||||||||||||||||| ||||| ||| | ||||||||||
Sbjct: 257 ctagagcacgaggcaactcagctgctacagacagcccaaagcagccccacaccccgacac 316
Query: 103 ccaggattagaatgaaggcatattcttaaaacatttctgtgttcttttaaaaagaaacta 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ccaggattagaatgaaggcatattcttaaaacatttctgtgttcttttaaaaagaaacta 376
Query: 163 gggggctggtgagatggctcagtgggtaagagcacccgactgctcttctgaaggtccgga 222
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 377 gggggctggtgagatggctcagtgggtaagagcacccgactgctcttccgaaggtccaga 436
Query: 223 gttcaaatcccagcaaccacatgatggctcacaaccatctgtaatgagatctgactcact 282
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 437 gttcaaatcccagcaaccacatggtggctcacaaccatctgtaataagatctgactcact 496
Query: 283 cttctggagtgtctgaagacagctacagtgtacttacatataaataaataaataaatctt 342
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 cttctggagtgtctgaagacagctacagtgtacttacatataaataaataaataaat--- 553
Query: 343 tataaataaataaataaataaataaataaataaaaagaaactaaatgtccagaatcccac 402
||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 554 ---aaataaataaataaataaataaata--------gaaactaaatgtccagaattccac 602
Query: 403 cttgttccctagcttgcaatgatcaagtctctgttcgccacagagctgcctgggtcttct 462
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 603 cttgttccctagcttgcaatgatcaagtctctgttcgctacagagctgcctgggtcttct 662
Query: 463 acatgctgacattctctgggcttcatttccacagccaggtttaggtttctgggttggggt 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 acatgctgacattctctgggcttcatttccacagccaggtttaggtttctgggttggggt 722
Query: 523 cccatcttctcagcaccctgaggtgcagggtgagacccagt 563
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 cccatcttctcagcaccctgaggtgcagggtgagacccagt 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no337_l07.g1 MSMg01no337_l07.g1 CHROMAT_FILE:
MSMg01no337_l07.g1 PHD_FILE: MSMg01no337_l07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:10 2005
(454 letters)
>mm_chr11_117969636_117970489
Length = 854
Score = 870 bits (450), Expect = 0.0
Identities = 453/454 (99%)
Strand = Plus / Minus
Query: 1 ccagcagccccttggcaggaggcaacctccgggttagtgttcagaaaagcatgaccatct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ccagcagccccttggcaggaggcaacctccgggttagtgttcagaaaagcatgaccatct 595
Query: 61 gttgtgatgactgacaatctataaaccctgtaggacctctcaataccagtaaatagctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 gttgtgatgactgacaatctataaaccctgtaggacctctcaataccagtaaatagctct 535
Query: 121 cctcatcatagagaacttgggatgcccagagtctgttagccacagctatgatgggacctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 cctcatcatagagaacttgggatgcccagagtctgttagccacagctatgatgggacctg 475
Query: 181 agtctgaggtggtcaaagaaaggacagtctagccagttgcaggccatagctcataaccgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 agtctgaggtggtcaaagaaaggacagtctagccagttgcaggccatagctcataaccgg 415
Query: 241 agaggcaactggtatagtgggaagagctccagagtaaatcttgatagcatctcctgacag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 agaggcaactggtatagtgggaagagctccagagtaaatcttgatagcatctcctgacag 355
Query: 301 atggagttggtatcctgtagctttgcagcctcacctgaggcattaagacatggactggct 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 354 atggagttggtatcctgtagctttgcagcctcaccagaggcattaagacatggactggct 295
Query: 361 gcagccatgtagggatacaagggcttgttgagcaagtcgtgatggcagccattgtctcac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gcagccatgtagggatacaagggcttgttgagcaagtcgtgatggcagccattgtctcac 235
Query: 421 cttctgaaagggtgaccctggttttatgtgaagt 454
||||||||||||||||||||||||||||||||||
Sbjct: 234 cttctgaaagggtgaccctggttttatgtgaagt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space: 374736
Effective search space used: 374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
