Query= MSMg01no339_d18.b1 MSMg01no339_d18.b1 CHROMAT_FILE:
MSMg01no339_d18.b1 PHD_FILE: MSMg01no339_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:01 2005
(502 letters)
>mm_chr11_42252512_42253413
Length = 902
Score = 857 bits (443), Expect = 0.0
Identities = 488/513 (95%), Gaps = 17/513 (3%)
Strand = Plus / Minus
Query: 1 aaaatttatatttaaaagagactaagcatttcatatacttacaaggaaatatgcatgtgc 60
||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||
Sbjct: 594 aaaatttatatttaaaagacactaagcatttcatatacttacaagaaaatatgcgtgtgc 535
Query: 61 atgagcgcgagcgcgcacgcgcacacacacacacacacacacacacacacacacacacac 120
| | |||||||||||| |||| | | |||||||||||||||||||||||||||||
Sbjct: 534 acgcgcgcgagcgcgcgcgcg------cgcgcacacacacacacacacacacacacacac 481
Query: 121 acaccacaaatgcctttctatagtttctgatctcttaccctttctcaaagacatttttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 acaccacaaatgcctttctatagtttctgatctcttaccctttctcaaagacatttttga 421
Query: 181 ttaaccaagatgaaagttactccaccatcaaagaatctaaacctcttaaatgatatactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ttaaccaagatgaaagttactccaccatcaaagaatctaaacctcttaaatgatatactg 361
Query: 241 cattttcttcagttttgtggcattttctagaaat-----------cagatcaacatgacc 289
|||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 360 cattttcttcagttttgtggcattttctagaaatcacgagccaaacagatcaacatgacc 301
Query: 290 atcaaaacagatcaataaatcaaactggcatatcatggtagtaaacatgggcagacaata 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 atcaaaacagatcaataaatcaaactggcatatcatggtagtaaacatgggcagacaata 241
Query: 350 ttcgccttagactactgtgatgggagagcttttatgtcctctttcttaaagcaccagctg 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ttcgccttagactactgtgatgggagagcttttatgtcctctttcttaaagcaccagctg 181
Query: 410 tcaggatgcaagccagttctgcctcagtgttgagtcttgccaagccattactgtgaaaga 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tcaggatgcaagccagttctgcctcagtgttgagtcttgccaagccattactgtgaaaga 121
Query: 470 aatcacagagtggtagatgtactatttcagtct 502
|||||||||||||||||||||||||||||||||
Sbjct: 120 aatcacagagtggtagatgtactatttcagtct 88
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space: 438864
Effective search space used: 438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_d18.g1 MSMg01no339_d18.g1 CHROMAT_FILE:
MSMg01no339_d18.g1 PHD_FILE: MSMg01no339_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:02 2005
(501 letters)
>mm_chr11_42110399_42111299
Length = 901
Score = 884 bits (457), Expect = 0.0
Identities = 501/541 (92%), Gaps = 40/541 (7%)
Strand = Plus / Plus
Query: 1 ttgcatcagaaagtttcatgattggcagcagaaggaaggccagagccagatcctggagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 ttgcatcagaaagtttcatgattggcagcagaaggaaggccagagccagatcctggagaa 220
Query: 61 atgacaactttcttaggtaagcaaagcttgtattttgcacactgaagaaattttttaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 atgacaactttcttaggtaagcaaagcttgtattttgcacactgaagaaattttttaaaa 280
Query: 121 tttaattgaagaggatactggtatttatttaagaaatatctatgaaatatcagtaaaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tttaattgaagaggatactggtatttatttaagaaatatctatgaaatatcagtaaaata 340
Query: 181 ttaaatattgttctagacactagagaaataaaaattaaatagcaatatctagtctaaagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ttaaatattgttctagacactagagaaataaaaattaaatagcaatatctagtctaaagt 400
Query: 241 atctatcattggttgataaatgatatacctgggacaataataaaagaattgtgttttata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 atctatcattggttgataaatgatatacctgggacaataataaaagaattgtgttttata 460
Query: 301 tatatgtatgttataaagtatatatatatatatata------------------------ 336
||||||||||||||||||||||||||||||||||||
Sbjct: 461 tatatgtatgttataaagtatatatatatatatatatatatatatatatatatatatata 520
Query: 337 ----------catatata------tatatgtatatatatacacacactttcacaacaatg 380
|||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 521 tatatatatacatatatacatatatatatgtatatatatacacacactttcacaacaatg 580
Query: 381 ctacaaaatcattattaaagtaaaaaccactcaaaaattttatgtgatttgcctgaagat 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ctacaaaatcattattaaagtaaaaaccactcaaaaattttatgtgatttgcctgaagat 640
Query: 441 acattattaaaatgtgtttcactgtataagcatacctgttcagtccagaatctctgctgt 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 acattattaaaatgtgtttcactgtataagcatacctgttcagtccagaatctctgctgt 700
Query: 501 g 501
|
Sbjct: 701 g 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
