Query= MSMg01no339_i04.b1 MSMg01no339_i04.b1 CHROMAT_FILE:
MSMg01no339_i04.b1 PHD_FILE: MSMg01no339_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:21 2005
(587 letters)
>mm_chr11_88315127_88316113
Length = 987
Score = 1110 bits (574), Expect = 0.0
Identities = 577/578 (99%)
Strand = Plus / Plus
Query: 10 gaattcttattgtaccggacgagttatccgattcacatatcacattatgcccttgaggga 69
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gaattcttattgcaccggacgagttatccgattcacatatcacattatgcccttgaggga 269
Query: 70 ggcactatcatcaccgtctgcatctataaacaaggaaattcagatcctgaaggcagagca 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ggcactatcatcaccgtctgcatctataaacaaggaaattcagatcctgaaggcagagca 329
Query: 130 ttttggcttcggacaccctgtgtgtgaggggcagggtctgggtttaaaggcagtcccatg 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ttttggcttcggacaccctgtgtgtgaggggcagggtctgggtttaaaggcagtcccatg 389
Query: 190 agacccccattttgctgtgtgctacttcatgtttagagagtctggaggctactcacccac 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 agacccccattttgctgtgtgctacttcatgtttagagagtctggaggctactcacccac 449
Query: 250 cagtgcactctctgggtaagatatagtggactgtatttagattttctataatgcaatacc 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 cagtgcactctctgggtaagatatagtggactgtatttagattttctataatgcaatacc 509
Query: 310 tttataaggaatgtattaatttttataataagagaataaagaattcaaaagtgaaaaaaa 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tttataaggaatgtattaatttttataataagagaataaagaattcaaaagtgaaaaaaa 569
Query: 370 aaaaggcagtggcggacttccaagttcaggcccctaaactcggtgccatgttccttatag 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 aaaaggcagtggcggacttccaagttcaggcccctaaactcggtgccatgttccttatag 629
Query: 430 aatgggaaaggtgagtggcgtctacaccgcgcccaaatatcgtgaagaagtaagtgctga 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 aatgggaaaggtgagtggcgtctacaccgcgcccaaatatcgtgaagaagtaagtgctga 689
Query: 490 ggttgcaaggcctgatgtacactagacattcccaaaacgcctttttcttctatgctccct 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ggttgcaaggcctgatgtacactagacattcccaaaacgcctttttcttctatgctccct 749
Query: 550 ttctgtgtcttcctcctagggagctatgggaagacacc 587
||||||||||||||||||||||||||||||||||||||
Sbjct: 750 ttctgtgtcttcctcctagggagctatgggaagacacc 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_i04.g1 MSMg01no339_i04.g1 CHROMAT_FILE:
MSMg01no339_i04.g1 PHD_FILE: MSMg01no339_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:21 2005
(494 letters)
>mm_chr11_88503676_88504568
Length = 893
Score = 866 bits (448), Expect = 0.0
Identities = 481/492 (97%), Gaps = 1/492 (0%)
Strand = Plus / Minus
Query: 1 ttgcatggggtttgatccctagcagtacataaaccaagcatgatttgtatacacttgtta 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 ttgcatgggggttgatccctagcagtacataaaccaagcatgatttgtatacacttgtta 713
Query: 61 tcccagcatttggaaggtaaaaggcaggatcagcagaaagagagaggttctgggtcatcc 120
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 712 tcccggcatttggaaggtaaaaggcaggatcagcaggaagagagaggttctgggtcatcc 653
Query: 121 ttggtgtagtgaggttggggctagcttagactatatgagaccttgtatcaaaaaccaacc 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 ttggcgtagtgaggttggggctagcttagactatatgagaccttgtatcaaaaaccaacc 593
Query: 181 aaccaaaagttgttagcatcactgaaatcctttaccatgtatattctgatttttgccagt 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 592 aaccaaaagttgttagcatcactgaaatcctttaccacgtatattctgatttttgccagt 533
Query: 241 cagccttgtttagtctttgtaggattcttttcccctccagcatggggggagaatagagga 300
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 532 cagccttgtttagtctttgtaggattcttttcccctccagcacggggg-agaatagagga 474
Query: 301 tcaggcgtgacacttgtttctatgccttctttgtcaactgaatctggaattccacagtct 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tcaggcatgacacttgtttctatgccttctttgtcaactgaatctggaattccacagtct 414
Query: 361 ccagtcgtgttctcacctacaaaggatatactgcttccaggctagggagctggctcactg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ccagtcgtgttctcacctacaaaggatatactgcttccaggctagggagctggctcactg 354
Query: 421 ggtaaagcgcttgaggacctgtgttcagatctccagtgtccacatagagccaagcttgtc 480
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ggtaaagtgcttgaggacctgggttcagatctccagtgtccacatagagccaagcttgtc 294
Query: 481 tgcgtgtctgaa 492
||| ||||||||
Sbjct: 293 tgcatgtctgaa 282
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 893
Length adjustment: 10
Effective length of query: 484
Effective length of database: 883
Effective search space: 427372
Effective search space used: 427372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
