BAC Information

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BAC

Clone NameMSMg01-340L17
Chromosome11 (Build37)
Map Location 112,401,933 - 112,578,238
singlet/doubletdoublet
Overlap geneLOC100041610, LOC671963, LOC667047, BC006965
Upstream geneLOC100041559, EG629966, LOC629967, LOC100041589, LOC100043020, EG668396, EG667038
Downstream geneSox9, 2610035D17Rik, Slc39a11, Sstr2, Cog1, D11Wsu99e, D11Wsu47e, D11Ertd636e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340L17.T7 (MSMg01no340_l17.b1)MSMg01-340L17.TJ (MSMg01no340_l17.g1)
ACCAG454698AG454699
length736744
length of high quality
(start - end)		611 (50 - 660)540 (74 - 613)
definitionCHROMAT_FILE: MSMg01no340_l17.b1 PHD_FILE: MSMg01no340_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:48 2005CHROMAT_FILE: MSMg01no340_l17.g1 PHD_FILE: MSMg01no340_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,577,632 - 112,578,238)(112,401,933 - 112,402,472)
sequence
NAAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCAACACTATATCTAGGTTATTGCATAAGCTCGGGGAATGTG
GCCCTTTGTCTTTCAGGTGACATTTTACCCTCTGTGCTGCTGAAATAATG
GTCAGTAGAGCCTGAGTTGGAAGACAAAGTGTGTTCCTGTCACCCTGAGG
AGAATGGAAAGTCCCTTACGCAGAGGACAAACACAGAGCTGTGTGTGGCC
GGCACATACACCTTTTCTTCAGTTACACGGCTCCTGACAGATGAGGATGC
GAGGGTCGAGTAATTCCCCATAAACTCTGGGTCCTACGGCAGATTGAAAA
TGTAAAGGCTCCGTCTGGAGCTGGCATGTCATGCATGGACTCAGAAGCCC
AAAGAGGCCCGCTGCCTCTGAGAGACTGCTCTCACTTCTGGAAAAAGCTT
AGAAGTGGCTTCTATGTTCTCCACCTAGAAAACCACAGGGCGGGATCCTG
CCTTGACCCTCAGCACCGGTGTATTCAGGTGCCTGCTGGCCATGGAAGGC
AAGACAGAACACCAGACTCCCTTTGTCAGGGCATGTGCATTGTCCCATGT
GGAGGGCAGCAGCCCTTAGAGGGAAGGATGGAAAGGAGAATGCAGGCCTG
GTTGCTGAGGCACAGGGGTCAAGTGGTGTGAAACCCTCTTCAGGAGGGTG
AGCTGACTGGGGAGTCAGATCACAATTCTGCACTCT

NCGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACCATTCTACCTTGAGAATTCAAGGGT
GATTATTGGCCTGTGGTTATGTTTTGGAAGTATTCTCTTGACTGATGATT
GATGTAGGAATGGCCACCCCACTGTGGGCAGTGACAACCGCTATACAGGT
GGGCCTGGTGTGTATAAGCAAAGCAGCAGAGATAGCCAATAAGCTGAGTT
GCTCTGTTGGTTTCTAGTTCAAGCGCTTGCCTTGAGTTTTTGCCTGGGCT
TCCCTCAATGAGTTGAGCTGTTGTCTGTAAGCAGAAATAAGCCCTCTCCT
CCCCTACTTGTTTTTGTTCAGTGTTTTATCATAACAACAGAAACCAAACT
ACCTACAGTAGGGAGGACTGCAGGGCCTATTGCAGCCAACTCTCTACTAC
TACCCTGTTCTTGGTGTGGTAAGTAACTGAAAGTCATGAAACAGCAAACA
GCACTTTGTTCTTATTACCTTCAACAGTTCTTTTCCAAATGGGTTCAGAC
AAGTCTCCATTGTCTTTCTGTGAGGGGCTAGGAAATACACAGCCAGGTTT
AGCCCTCTGAGGGAAACTTCACTCAACCCTCAGTCAATTGGGCCAAAGAT
TCTCACTCACCAGCAGTGTTTTTGAGGAAGGCAAGCAGAATAGATCCTGT
TCATGATATATTTTTATTTTCCCCCCGTTTTGAAAAAAAATATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_l17.b1 MSMg01no340_l17.b1 CHROMAT_FILE:
MSMg01no340_l17.b1 PHD_FILE: MSMg01no340_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:48 2005
         (611 letters)



>mm_chr11_112577428_112578438
          Length = 1011

 Score = 1135 bits (587), Expect = 0.0
 Identities = 602/607 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaacactatatctaggttattgcataagctcggggaatgtggccctttgtcttt 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 gaattccaacactatatataggttattgcataagctcggggaatgtggccctttgtcttt 752

                                                                       
Query: 65  caggtgacattttaccctctgtgctgctgaaataatggtcagtagagcctgagttggaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 caggtgacattttaccctctgtgctgctgaaataatggtcagtagagcctgagttggaag 692

                                                                       
Query: 125 acaaagtgtgttcctgtcaccctgaggagaatggaaagtcccttacgcagaggacaaaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 acaaagtgtgttcctgtcaccctgaggagaatggaaagtcccttacgcagaggacaaaca 632

                                                                       
Query: 185 cagagctgtgtgtggccggcacatacaccttttcttcagttacacggctcctgacagatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 cagagctgtgtgtggccggcacatacaccttttcttcagttacacggctcctgacagatg 572

                                                                       
Query: 245 aggatgcgagggtcgagtaattccccataaactctgggtcctacggcagattgaaaatgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 aggatgcgagggtcgagtaattccccataaactctgggtcctacggcagattgaaaatgt 512

                                                                       
Query: 305 aaaggctccgtctggagctggcatgtcatgcatggactcagaagcccaaagaggcccgct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 aaaggctccgtctggagctggcatgtcatgcatggactcagaagcccaaagaggcccgct 452

                                                                       
Query: 365 gcctctgagagactgctctcacttctggaaaaagcttagaagtggcttctatgttctcca 424
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 451 gcctctgagagactgctctcacttctggaaaaagcttagaaatggcttctatgttctcca 392

                                                                       
Query: 425 cctagaaaaccacagggcgggatcctgccttgaccctcagcaccggtgtattcaggtgcc 484
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 391 cctagaaaaccacagggcgggatcctgccttgaccctcagcaccagtgtattcaggtgcc 332

                                                                       
Query: 485 tgctggccatggaaggcaagacagaacaccagactccctttgtcagggcatgtgcattgt 544
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tgctggccatggaaggcatgacagaacaccagactccctttgtcagggcatgtgcattgt 272

                                                                       
Query: 545 cccatgtggagggcagcagcccttagagggaaggatggaaaggagaatgcaggcctggtt 604
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 271 cccatgtggagggcagcagccctcagagggaaggatggaaaggagaatgcaggcctggtt 212

                  
Query: 605 gctgagg 611
           |||||||
Sbjct: 211 gctgagg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no340_l17.g1 MSMg01no340_l17.g1 CHROMAT_FILE:
MSMg01no340_l17.g1 PHD_FILE: MSMg01no340_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:48 2005
         (540 letters)



>mm_chr11_112401733_112402672
          Length = 940

 Score =  975 bits (504), Expect = 0.0
 Identities = 531/540 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   accattctaccttgagaattcaagggtgattattggcctgtggttatgttttggaagtat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 201 accattctaccttgagaattcaagggtgattattggcctgtggttatgttttgggagcat 260

                                                                       
Query: 61  tctcttgactgatgattgatgtaggaatggccaccccactgtgggcagtgacaaccgcta 120
           ||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||
Sbjct: 261 tctcttgactgatgattgatgtaggaagggccacgccattgtgggcagtgacaaccgcta 320

                                                                       
Query: 121 tacaggtgggcctggtgtgtataagcaaagcagcagagatagccaataagctgagttgct 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacaggtgggcctggcgtgtataagcaaagcagcagagatagccaataagctgagttgct 380

                                                                       
Query: 181 ctgttggtttctagttcaagcgcttgccttgagtttttgcctgggcttccctcaatgagt 240
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 381 ctgttggtttctagttcaagcgctcgccttgagtttttgcctgggcttccctcaatgatt 440

                                                                       
Query: 241 tgagctgttgtctgtaagcagaaataagccctctcctcccctacttgtttttgttcagtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagctgttgtctgtaagcagaaataagccctctcctcccctacttgtttttgttcagtg 500

                                                                       
Query: 301 ttttatcataacaacagaaaccaaactacctacagtagggaggactgcagggcctattgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttatcataacaacagaaaccaaactacctacagtagggaggactgcagggcctattgc 560

                                                                       
Query: 361 agccaactctctactactaccctgttcttggtgtggtaagtaactgaaagtcatgaaaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agccaactctctactactaccctgttcttggtgtggtaagtaactgaaagtcatgaaaca 620

                                                                       
Query: 421 gcaaacagcactttgttcttattaccttcaacagttcttttccaaatgggttcagacaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcaaacagcactttgttcttattaccttcaacagttcttttccaaatgggttcagacaag 680

                                                                       
Query: 481 tctccattgtctttctgtgaggggctaggaaatacacagccaggtttagccctctgaggg 540
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctccattgtctttctgtgagaggctaggaaatacacagccaggtttagccctctgaggg 740


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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