Query= MSMg01no341_l19.b1 MSMg01no341_l19.b1 CHROMAT_FILE:
MSMg01no341_l19.b1 PHD_FILE: MSMg01no341_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:04 2005
(412 letters)
>mm_chr11_4185407_4186218
Length = 812
Score = 748 bits (387), Expect = 0.0
Identities = 402/407 (98%), Gaps = 2/407 (0%)
Strand = Plus / Minus
Query: 7 gaattcacagaacctgccaaagactcactatcccagaaagggttacacaccaagagctcc 66
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gaattcacagaacctggcaaagactcactatcccagaaagggttacacaccaagagctcc 553
Query: 67 agcagacccaggcaagttttgctgattttggaaggcaaagcccagagtagagacacacca 126
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 552 agcagacccaggcaagttttgctgattttggaaggcaaagcccagagtagagacac-ccc 494
Query: 127 g-ctttgcacctatgctggtagctatggccacagccccaagaggagagctgtctcaggct 185
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gactttgcacctatgctggtagctatggccacagccccaagaggagagctgtctcaggct 434
Query: 186 gggctctgcaagcatccactctgtccttggagttttgccaggcaggtttttgttttggtt 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gggctctgcaagcatccactctgtccttggagttttgccaggcaggtttttgttttggtt 374
Query: 246 tgatgtttatctgttgagaaaactgacagtcagagagatgatatcatttgccaatggtag 305
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 373 tgatgtttatctgttgagaaaactgacagtcagagagatgatatcatttgccaatggtgg 314
Query: 306 aggcctcagcttcgatatcagagacctcccacacccacccaccaaggctggagcaagtgt 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aggcctcagcttcgatatcagagacctcccacacccacccaccaaggctggagcaagtgt 254
Query: 366 gagccaagtctgacctggaaaccgggacatttgacacgaagaggacc 412
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gagccaagtctgacctggaaaccgggacatttgacacgaagaggacc 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space: 323609
Effective search space used: 323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no341_l19.g1 MSMg01no341_l19.g1 CHROMAT_FILE:
MSMg01no341_l19.g1 PHD_FILE: MSMg01no341_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:04 2005
(393 letters)
>mm_chr11_4066258_4067050
Length = 793
Score = 752 bits (389), Expect = 0.0
Identities = 392/393 (99%)
Strand = Plus / Plus
Query: 1 attctttggtatgttgtttatcttattttaattttttacagaaatgggcctgaatttgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctttggtatgttgtttatcttattttaattttttacagaaatgggcctgaatttgaa 260
Query: 61 gctaggattcgacagaatgagatcaacaaccccaagttcaatttcttaaatcccaatgac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctaggattcgacagaatgagatcaacaaccccaagttcaatttcttaaatcccaatgac 320
Query: 121 ccttaccatgcctactaccgccacaaggtcagcgagttcaaggaggggaaggctcaggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttaccatgcctactaccgccacaaggtcagcgagttcaaggaggggaaggctcaggag 380
Query: 181 ccctcagctgccatccccaaggttatgcagcagcagcagcaagctacgcaacagcagctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccctcagctgccatccccaaggttatgcagcagcagcagcaagctacgcaacagcagctg 440
Query: 241 ccccagaaggtttgcagtccagcctctctttgtgggttagtgggcgggcataattatctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccccagaaggtttgcagtccagcctctctttgtgggttagtgggcgggcataattatctc 500
Query: 301 tgctgtgcacgatcacaaccaccatgggcagaaataaagttactatcagcttctagaagc 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 tgctgtgcacgatcacaaccaccatgggcagaaataaagttaccatcagcttctagaagc 560
Query: 361 ttctgcacactggttgtgaagctctgtcctcca 393
|||||||||||||||||||||||||||||||||
Sbjct: 561 ttctgcacactggttgtgaagctctgtcctcca 593
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space: 301056
Effective search space used: 301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
