BAC Information

Click to search

BAC

Clone NameMSMg01-341M08
Chromosome11 (Build37)
Map Location 36,439,171 - 36,632,358
singlet/doubletdoublet
Overlap geneOdz2
Upstream geneSlit3, Pank3, LOC666733, AI595406, Rars, Wwc1, LOC636532
Downstream geneLOC100039148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341M08.T7 (MSMg01no341_m08.b1)MSMg01-341M08.TJ (MSMg01no341_m08.g1)
ACCAG455484AG455485
length783768
length of high quality
(start - end)
199 (66 - 264)352 (74 - 425)
definitionCHROMAT_FILE: MSMg01no341_m08.b1 PHD_FILE: MSMg01no341_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:06 2005CHROMAT_FILE: MSMg01no341_m08.g1 PHD_FILE: MSMg01no341_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,439,171 - 36,439,369)(36,632,007 - 36,632,358)
sequence
TTAATTTGCNNCCGCTATACAACTCNTTATTCGTAGAGGATNCGCGGAAT
TCTAAAATTTCCGACCACATCTGATGAGGACCTTCATGCTCATTANCCCA
TGAAAGGAGTAAGCTCAAAAGAGTGTGAGAGATAGAGGGACCAGGAGGGA
ACTAGGCTTCCTTTTATAGCAATCAATTTTGGTGACAGCTAACCCAGTCC
TGTGATAACTGCATTCTTATATTCATTAGTAAAACCCTCTTTATCCAAAT
ACTTTGTTGCTTGGNAGATTAAGTTTCTAACACATAAACTTTAGGGAACA
TAGACAACCAATTTTATGCTTGNNNNNNGGGGGGGGGGGTGGGGGGGGGG
GGACGGGGCNNNTTNCAGTCAATAGGGGGTTTNNNNNNNNNGGGGGGGGG
GGGGGGATTTTTCNCCNNNNNCNNNNCCCCNNNNNNNNNNNNNNNNNNNN
NNNNNNNCTTTTTTTTTTTTACCCCTCGTTTTTTAGTTTTTTTTTTAANT
CCTTTTAATAAAATTTCCCTAACAATATTTTTTCTTTCTCCCTCATTTTT
CTTTCCCCCCCTTTCTTNTTTTTTTTTNNNCCCCCTTTCCCTTTTTCCCT
TCCCTCCCTTTTCTTTTTTTCCTTCCTCCTTTTTCCTCCTTTTTTTTTTT
CTTTTTCTTTCCCCTTCTTCTTTCTTTTTTATCTTTTCTCTTTTTTCCCT
CCCCTTNNTTTTCNCCCTTTTCTCTTTTCCCCTTTTTTTCCTTTTCCTTT
CCTTTTCCTTCCCTTTTACCCCGGGTCGGCCCG
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAACCCAAATTATGCACTGGACATCTAC
TCTGTGTGGCAAGCCACACAGCTGCCAAGAAAGCAGCCCCCCATGTGCAG
CAGAATTTGATTTTTGGGGTAGGGGAATTGGACTGGGAAAGAATACACAC
ACAAAAAAATCCAGAGGTAGGAGGACTGCAGAATAGATCATGCAGGGGCA
GATAGGAGAGGTCTCTTTGCAGAAAGCCAAGAAAACTCTCTCTGAAGGTA
CGAGTGTAAGAGTTACTGAAAAGCCCTGTGTGCACTTCAGAGCTTCAGCA
TGTCTGTGTGTCCTGAGAGAAATGCATGTGAAAGAAAACTTCATGGTACC
TAATGATGTAGCTGAGGGCAATGCAGTACGCAGGCAACACTGTCAAAAGT
GATGATCTATAAGGGATTTCTACTTCCTGTCTTTTGACACATTTTGGAAG
GATTCTAACGGCCATTGACTATGCATACTCTTACTCCATCCTAACGACTT
TCCCGTACCCCCTCCCCTTTTACTTTCTTTCCCATGATAATCGCCAATAC
CCCCCTCCCCGTTTCGTCCTCCTCCTGTCCACACCTTAACTTTCCGCATT
TTCGTTAAATCGTCCCCCGTTCCATTCTCGCACCTTCCTTGCCCTTTTCG
TGGCCCCTACTTCCCCCTTCCCCTTCTCCCCCCCTCTTTTTCTTTTTTTC
AGCCCCTTCTTCCCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_m08.b1 MSMg01no341_m08.b1 CHROMAT_FILE:
MSMg01no341_m08.b1 PHD_FILE: MSMg01no341_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:06 2005
         (199 letters)



>mm_chr11_36438971_36439569
          Length = 599

 Score =  379 bits (196), Expect = e-110
 Identities = 198/199 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacatctgatgaggaccttcatgctcattancccatgaaaggagtaagctcaaaagagtg 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 cacatctgatgaggaccttcatgctcattagcccatgaaaggagtaagctcaaaagagtg 260

                                                                       
Query: 61  tgagagatagagggaccaggagggaactaggcttccttttatagcaatcaattttggtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagagatagagggaccaggagggaactaggcttccttttatagcaatcaattttggtga 320

                                                                       
Query: 121 cagctaacccagtcctgtgataactgcattcttatattcattagtaaaaccctctttatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagctaacccagtcctgtgataactgcattcttatattcattagtaaaaccctctttatc 380

                              
Query: 181 caaatactttgttgcttgg 199
           |||||||||||||||||||
Sbjct: 381 caaatactttgttgcttgg 399


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 599
Length adjustment: 8
Effective length of query: 191
Effective length of database: 591
Effective search space:   112881
Effective search space used:   112881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no341_m08.g1 MSMg01no341_m08.g1 CHROMAT_FILE:
MSMg01no341_m08.g1 PHD_FILE: MSMg01no341_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:06 2005
         (352 letters)



>mm_chr11_36631807_36632558
          Length = 752

 Score =  665 bits (344), Expect = 0.0
 Identities = 350/352 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacccaaattatgcactggacatctactctgtgtggcaagccacacagctgccaagaaag 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 552 aacccaaattatgcactggacatttactctgtgtggcaagccacacagctgccaagaaag 493

                                                                       
Query: 61  cagccccccatgtgcagcagaatttgatttttggggtaggggaattggactgggaaagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 cagccccccatgtgcagcagaatttgatttttggggtaggggaattggactgggaaagaa 433

                                                                       
Query: 121 tacacacacaaaaaaatccagaggtaggaggactgcagaatagatcatgcaggggcagat 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 432 tacacacacaaaaaaatccagagttaggaggactgcagaatagatcatgcaggggcagat 373

                                                                       
Query: 181 aggagaggtctctttgcagaaagccaagaaaactctctctgaaggtacgagtgtaagagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 aggagaggtctctttgcagaaagccaagaaaactctctctgaaggtacgagtgtaagagt 313

                                                                       
Query: 241 tactgaaaagccctgtgtgcacttcagagcttcagcatgtctgtgtgtcctgagagaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tactgaaaagccctgtgtgcacttcagagcttcagcatgtctgtgtgtcctgagagaaat 253

                                                               
Query: 301 gcatgtgaaagaaaacttcatggtacctaatgatgtagctgagggcaatgca 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gcatgtgaaagaaaacttcatggtacctaatgatgtagctgagggcaatgca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space:   254849
Effective search space used:   254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)