BAC Information

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BAC

Clone NameMSMg01-341O07
Chromosome11 (Build37)
Map Location 116,113,326 - 116,113,573
singlet/doubletsinglet
Overlap geneSrp68
Upstream geneGrin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl
Downstream geneGalr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036, Sec14l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341O07.T7 (MSMg01no341_o07.b1)MSMg01-341O07.TJ (MSMg01no341_o07.g1)
ACCAG455577AG455578
length844796
length of high quality
(start - end)		39 (71 - 109)303 (80 - 382)
definitionCHROMAT_FILE: MSMg01no341_o07.b1 PHD_FILE: MSMg01no341_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:15 2005CHROMAT_FILE: MSMg01no341_o07.g1 PHD_FILE: MSMg01no341_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCAAAATTGCGGGCGCTAAACGACTCCTATATTCCAAGATCCGCGGAAT
TCCCAGTTATTCGGAAAGGATTTGCCACCCGTCCTGCGGGGGCGGGGGGA
GGGGGGGGTACAAACTCCCCGTATTTCTCTGTATGTGTCCCATTCTTGAC
TAGCAATACCTAGTCCATTCCATAGAATTGTTCTGCGATCGAACCTTGAA
AACTACTGTGTTCGTTAGCCGCGCGTTTACAGATTTCCCACATTACTTGC
TCTTTTTATCATATCCACCTTATTACCTTCGCCCAAATTACACCCATACA
CCCTAATTATAGCCTCTTTTTTTTTTCACACTATTAACCCACACGCTCCC
AGTTACCAAATCGCAATTTCTCCCCCCTATACTCCATTCCTCTTCTTGTT
TAACCCTACCACAAATCTTATCTTCCATAACCTTATTTTACATATTCTAC
CACTCCTTACCTCCTACAATATAACTTTTTCTTTATACCTCCCTACTTTA
ATTTTATAACTACCCCCTATTTATTCCCCTTTTTTCTCCTACCCTTGCTT
TATCTACTTTATCCCCTCCCATTTCTATTAAATACTCTAAACAACTCACT
TGCTCCCCACCCGGTAATATTTTTCTCTACCTTCCCCCTTTGTAACAATC
TCACCACATTATCTATCTTCTTAATATCCATCTCACAAACTCAATTACCT
TTTTCCTCCCCTTAAGCCCCACACCCCACCCCTTCTACCCTATTTTTTTT
ATTTTCCATATTCCCCCTCCCTTAATAACTACCCCATATTTCTCGCTTAT
TAAATCCGTATATTACCCCTCTATACCTATTTCCTACCCTCCTT

TCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATTGAGCTGAAATGATTACG
TGAAAGTGACATGAACTGCAGAGCTCAGGAGCTGTAGGGAGTGAGCCCTA
GGTCACAGATGCTCCAAGGTCACTGCCAGAGGCTGGCTTCGGTGGCTCAT
ACCTCAAATTCCACCATGCTCAAGACCGAGGCACAAGGAGTTATAAGAGT
TAGAGGCCAGCCTAGGCTAGCAGTGAGATCTTGCACTTGCACACACGCAC
ACACGCACACGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCGCTTTTTCCC
CCTTTTTTCTTCCCTTTTTATCTTTCCACTACCGCCCTCCCCCTTTATCC
CTGCTCTATCCCTTTTTTCTTCCTTCCCTCCTTCTTCCTTTCGGTTACTC
CTCTCTTCTTTCTTTTATCCGTCCCTCCCTTTCTTTCCCTTTTATATTCC
CGCCCCTTCTTCTTTTCCTTTTCCTTTCCTTCTCCTTTTCCCCCCCCTTT
TCCCCTCTTCCTTTTTTTTCCCCATCCTCCTTTCCTTTCTTTCCTTCTCT
TTTTCTTTTCTTTTCCCCTTTTTTCCTTCCTTTTTCCCTCTTTCTCTTTT
TTCCTCACCCTCTTTATTCCCCCCCCTTTTTACCCCTCTCTTTTTTCCCC
TTTTCTTTCCCGCTTCCCCCTTTCTCTTCTTTAACTTTCTTTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_o07.g1 MSMg01no341_o07.g1 CHROMAT_FILE:
MSMg01no341_o07.g1 PHD_FILE: MSMg01no341_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:15 2005
         (303 letters)



>mm_chr11_116113126_116113828
          Length = 703

 Score =  427 bits (221), Expect = e-124
 Identities = 243/253 (96%), Gaps = 8/253 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattgagctgaaatgattacgtgaaagtgacatgaactgcagagctcaggagctgtaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 aattgagctgaaatgattacgtgaaagtgacatgaactgcagagctcgggagctgtaggg 260

                                                                       
Query: 61  agtgagccctaggtcacagatgctccaaggtcactgccagaggctggct-tcggtggctc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 261 agtgagccctaggtcacagatgctccaaggtcactgccagaggctggctgt-ggtggctc 319

                                                                       
Query: 120 atacctcaaattccaccatgctcaagaccgaggcacaaggagttataagagttagaggcc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atacctcaaattccaccatgctcaagaccgaggcacaaggagttataagagttagaggcc 379

                                                                       
Query: 180 agcctaggctagcagtgagatcttgcacttgcaca--cacgcacacacgcacacgcagag 237
           ||||||||||||||||||||||||||||||||||   |||||||    ||||||||||||
Sbjct: 380 agcctaggctagcagtgagatcttgcacttgcacttgcacgcac----gcacacgcagag 435

                        
Query: 238 agagagagagaga 250
           |||||||||||||
Sbjct: 436 agagagagagaga 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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