BAC Information

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BAC

Clone NameMSMg01-342H14
Chromosome11 (Build37)
Map Location 61,906,067 - 61,906,548
singlet/doubletsinglet
Overlap geneSpecc1
Upstream geneLOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558
Downstream geneAdora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b, Cdrt4, Tekt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342H14.T7 (MSMg01no342_h14.b1)MSMg01-342H14.TJ (MSMg01no342_h14.g1)
ACCAG456018AG456019
length728748
length of high quality
(start - end)		487 (36 - 522)420 (66 - 485)
definitionCHROMAT_FILE: MSMg01no342_h14.b1 PHD_FILE: MSMg01no342_h14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:00 2005CHROMAT_FILE: MSMg01no342_h14.g1 PHD_FILE: MSMg01no342_h14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAAAT
TTTCCATAATCACAGGAACTGTCTGCAGCTGACAAAACTACACCTCTGCT
AGAGCATGAAGCAAATCATCGTCAGCTGCCGGGACAGTCTGAAGCAGCCC
CATATCGCACACCTGGGATTCAAACTGAAACATACTATTTCTGTGGTTTT
TAAGAAACCAAAATTCTTATTGCAATAAGTCAATCCAGCCTCTGGTCTTG
TCACATCTCTTTGCTGTCTTTGTTACTCTTGCTTTGTTCTAAAAGATCCA
TGTAGTAACACGGAACCCACCAGGCAATCTAGTACAGTTTCCATCTTAAC
CTCATCCTCAACATGTGTGCTTCTTATGTTGGAGAGTGAGTTATAGACAT
CCTTAAGAGAGCCACTGCTCAGTGTATTCTACAGGGAGGAGCATTGTAAG
CCTAATTAAAGCCTAGAGGTATCCTAAACATCAAGGAATAAACCCAGAAT
CAAGCAGTTATTTCTTCCTGTGGTGCTGGGAAAAGTTACAGAGGAGTTGG
GGACTGCGAACTGAGGGTTGAATATAAGTATTTGGTTGGGAAGGGCCATG
AATTCTTTAATTAAAAGCAACGTGGGTAAAAATCCTGAAATCCGGAGGAA
AATAAGGGTCCGGTTTCTTGTACAAACTGTGGGTTTTCATTTTAATTGGT
CCCCACTCCCACCCTACCGATTTTTTCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCTTTTCCCAGTTTGGGTCTTGTGTTAGCACATCC
TACAGTTTACTTTCCTCTTGTTGATCCACTTGTGTATTGTTACCTGTCTT
ATTGTATGCAGTACATACCTCAGTAGGTTTCTGAAGAAGGCATGAACTAT
GCTTTTGCGGCTTTGAATGTCTGAAAAAGGTTTTTCTGCTCTCACGCTTG
GTTAAAAGGTGTTGAGGGCGGCCAGCGGCCCACATGTCTGAGTTCTAGCC
TGGGAGGCATCTTGGAATCTGGAAGAAAAGAGGGAACTAGGCCGCACGAG
AAAGGATGGAACCAAGACATTAGTCTGATCAAGGTTCAATTTTACTATTT
GGAGACACGGGGTTATGAAGAAGGGGGAGGGGCCCATTCCCGCCAAATCA
TCCTTGGAGTCCAGTTTCAGGTGACCATGTGTTGGCTCTGGAACAGCTAG
GCGGCAGGTATTATCAGTGGGAGTGGCAGAACGATATGGTGGCAGGCTTC
CTCCCCAGGCTCTCTTAAGGCTAACAGTCAAACCTGATCAGCCCAATTTC
AGGTTTGTGGGGTGGGTTAGCGATTTTTCACCCCTCCTCCCCTCCTTCTT
TTTTTCCACCTTCTTCCCTCTTTCCTCTTTCTCTATTTCCCCCCCCCCCC
CTTCTTTTTATTTTCTCTTTTTCTTTTTTTTCCTTATTTTCTTCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_h14.b1 MSMg01no342_h14.b1 CHROMAT_FILE:
MSMg01no342_h14.b1 PHD_FILE: MSMg01no342_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:00 2005
         (487 letters)



>mm_chr11_61905863_61906748
          Length = 886

 Score =  849 bits (439), Expect = 0.0
 Identities = 472/483 (97%), Gaps = 1/483 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaaattttccataatcacaggaactgtctgcagctgacaaaactacacctctgc 64
           ||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 205 gaattccaaatgttacataatcacaggaactgtctgcagctgacaaaaccacacctctgc 264

                                                                       
Query: 65  tagagcatgaagcaaatcatcgtcagctgccgggacagtctgaagcagccccatatcgca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 265 tagagcatgaagcaaatcatcgtcagctgccgggacagtctgaagcagccccatatcaca 324

                                                                       
Query: 125 cacctgggattcaaactgaaacatactatttctgtggtttttaagaaaccaaaattctta 184
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cacctgggattcaaacggaaacatactatttctgtggtttttaagaaaccaaaattctta 384

                                                                       
Query: 185 ttgcaataagtcaatccagcctctggtcttgtcacatctctttgctgtctttgttactct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgcaataagtcaatccagcctctggtcttgtcacatctctttgctgtctttgttactct 444

                                                                       
Query: 245 tgctttgttctaaaagatccatgtagtaacacggaacccaccaggcaatctagtacagtt 304
           ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 tgctttgttctaaaagacccatgtagtaacaccgaacccaccaggcaatctagtacagtt 504

                                                                       
Query: 305 tccatcttaacctcatcctcaacatgtgtgcttcttatgttggagagtgagttatagaca 364
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tccatcttaacctcatcctaaacatgtgtgcttcttatgttggagagtgagttatagaca 564

                                                                       
Query: 365 tccttaagagagccactgctcagtgtattctacagggaggagcattgtaagcctaattaa 424
           |||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 565 tcctta-gagaaccactgctcagtgtatactacagggaggagcattgtaagcctaattaa 623

                                                                       
Query: 425 agcctagaggtatcctaaacatcaaggaataaacccagaatcaagcagttatttcttcct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agcctagaggtatcctaaacatcaaggaataaacccagaatcaagcagttatttcttcct 683

              
Query: 485 gtg 487
           |||
Sbjct: 684 gtg 686


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 886
Length adjustment: 10
Effective length of query: 477
Effective length of database: 876
Effective search space:   417852
Effective search space used:   417852
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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